Commit Graph

32927 Commits

Author SHA1 Message Date
19f93009c1 Implemented and documented has_id, id_count, and id_name 2022-10-25 19:51:08 -05:00
e68efc039f Resolved merging conflicts in three files 2022-10-25 14:37:33 -05:00
8c5ebb3942 Edit to make auto-merging easier 2022-10-25 08:34:48 -05:00
dfaff2dc9a Pre-emptive edits to ease auto-merging 2022-10-25 08:30:21 -05:00
2b8d6fc4d9 Merge pull request #3485 from akohlmey/collected-small-changes
Collected small changes and fixes
2022-10-24 18:23:52 -04:00
d313179917 add compatibility to VTK version 9.0 and above 2022-10-24 16:25:10 -04:00
248b7383c7 Merge remote-tracking branch 'github/develop' into collected-small-changes
# Conflicts:
#	src/DIPOLE/pair_lj_cut_dipole_long.h
#	src/OPENMP/fix_nvt_sllod_omp.h
#	src/PHONON/fix_phonon.h
#	src/SPIN/pair_spin_dipole_cut.h
#	src/SPIN/pair_spin_dipole_long.h
#	src/STUBS/mpi.h
#	src/UEF/fix_nh_uef.h
#	src/fix_nvt_sllod.h
#	tools/coding_standard/homepage.py
2022-10-24 15:50:50 -04:00
0146a19ed3 silence unrecognized pragma warnings 2022-10-24 15:42:17 -04:00
27b37ebad0 Merge pull request #3495 from akohlmey/update-email
Update contact email address in LAMMPS sources
2022-10-24 13:49:31 -04:00
3fe18c70ad Merge pull request #3497 from jrgissing/bond/react-create_atoms_error_check
Bond/react: create atoms error check
2022-10-24 13:17:28 -04:00
ffa0460ca0 Merge branch 'lammps:develop' into fortran-expansion 2022-10-24 11:53:19 -05:00
463ff1499c Added reminder to fortran/lammps.f90 in sync with tools/swig/lammps.i 2022-10-24 11:52:51 -05:00
2132b1d904 update developer reference text 2022-10-24 11:08:26 -04:00
a7d55526e8 update developer info 2022-10-24 11:06:32 -04:00
3c4b0a0c04 expand homepage checker tool to check a few more folders and apply updates 2022-10-24 10:58:39 -04:00
43bd7cfaf4 Merge pull request #3498 from schererc/develop
Update pair_threebody_table.cpp
2022-10-24 10:24:45 -04:00
b939ea55f6 allow -kokkos on g 0 without GPU support, report GPUs only if ngpu > 0 2022-10-24 05:05:49 -04:00
785b46e57b Implemented lmp_gather_bonds, lmp_find_*_neighlist, lmp_neighlist_num_elements, and their unit tests and documentation 2022-10-24 01:00:48 -05:00
1e2ffe6cb7 must bootstrap centos 7 from dockerhub now 2022-10-22 22:58:16 -04:00
7aea2b8840 update Plumed download to version 2.8.1 2022-10-22 22:57:53 -04:00
2aa1dfa6d6 replace one more suffix 2022-10-22 22:28:12 -04:00
cd621e74f5 it is safer to do a >= comparison instead of == for floating point numbers 2022-10-22 15:03:37 -04:00
94627b3ef7 remove redundant curly braces 2022-10-22 14:54:53 -04:00
b96028eaf2 Update pair_threebody_table.cpp
Correcting for hard coded ntheta = 79 in the extreme case that theta is exactly equal to 180.0 degrees.
2022-10-22 16:38:37 +02:00
01a0cb35a3 modernize calls to access the list of fixes in the Modify class 2022-10-22 08:20:16 -04:00
43e3dc7a9e use inline insertion sort for short array 2022-10-22 08:10:00 -04:00
d038b049c9 avoid superfluous calls to utils::strdup and improve error messages 2022-10-22 08:09:23 -04:00
5725e3cb1d silence compiler warning about not copying the final null byte 2022-10-22 08:08:16 -04:00
4f507b36da Update fix_bond_react.rst 2022-10-22 00:25:00 -04:00
007e6ffd95 bond/react: create atoms error check
check that post-reaction template has 'Coords' section if it has 'CreateIDs' section
2022-10-22 00:16:22 -04:00
165b6b4ba3 add workaround for missing links to fortran functions in sphinx output 2022-10-21 18:55:16 -04:00
b5cd834c8f small sphinx tweaks. require sphinx 5.2 or later. 2022-10-21 18:37:16 -04:00
2275281c2e Fixed double-colon "feature" in sphinx documetnation (theme.css) 2022-10-21 15:52:39 -05:00
6d8539e74f tweak for portability 2022-10-21 15:42:11 -04:00
1d69e93330 make Linux behavior default for loading Python shared lib
This adds portability to platforms like FreeBSD
2022-10-21 15:32:55 -04:00
caeaeb5d33 Python support in ML-IAP requires NumPy. Check for it if CMake supports it. 2022-10-21 15:31:41 -04:00
a8670f1ce9 Fixed potential inconsistency in lmp_error 2022-10-21 13:44:39 -05:00
fe09f1209e Fixed spacing 2022-10-21 12:41:07 -05:00
3c936d5a2b Fixed extract_atom doc 2022-10-21 12:16:57 -05:00
3cef658789 Added ":to:" fields to Fortran.rst; edits to :r's for consistency 2022-10-21 12:10:00 -05:00
6bb3ae83fd Fixed typo in Manual.rst 2022-10-21 10:59:48 -05:00
337d3f0760 Made module references more uniform 2022-10-21 10:58:05 -05:00
5c4bb611d1 find cythonize executable on recent FreeBSD versions 2022-10-21 11:25:13 -04:00
ed7d608919 Fixed hyperlinks to LIBLAMMPS in Fortran.rst 2022-10-21 09:53:07 -05:00
4d2661433f try to make more portable (in case this ever gets ported to windows) 2022-10-21 09:28:46 -04:00
ef83f78e1e add md5sums for plumed 2.7.5 and 2.8.1, update default version to 2.8.1 2022-10-21 09:28:15 -04:00
12baf65d7a correct implementation of quartic potential in pair style list 2022-10-21 02:25:40 -04:00
b6287a0fe6 Tweaks to Fortran docs 2022-10-21 00:34:24 -05:00
7ce04c8fe1 Fixed spacing on type lammps fields 2022-10-21 00:09:17 -05:00
112d616e57 unit tests for has_style, style_count, and style_name; added them to docs 2022-10-20 23:22:43 -05:00