Commit Graph

13931 Commits

Author SHA1 Message Date
80dffb27e2 Add missing header files 2017-12-01 11:33:42 -07:00
5b33f153f4 Add newline to memory_kokkos.h 2017-12-01 10:33:47 -07:00
31eb12920c Use multiple inheritance to remove accelerator_kokkos.h out of region.h and kspace.h 2017-12-01 10:18:22 -07:00
31f2ca1e4c Use multiple inheritance to remove accelerator_kokkos.h out of pair.h 2017-12-01 09:51:40 -07:00
15a3364c2c Make memory_kokkos its own class 2017-12-01 09:13:31 -07:00
c3aa705d04 Improve performance of pair_reaxc, this change is safe because the non-bonded i-loop doesn't include ghost atoms; this optimization is already included in the USER-OMP version 2017-11-30 09:22:32 -07:00
8c2d38c7e9 Remove non-existent function in reaxc_forces_omp 2017-11-30 09:13:03 -07:00
e3b961b622 Improve performance of PairReaxCKokkos 2017-11-30 09:10:39 -07:00
319508bd29 fix scoping ambiguity issue that confuses nvcc 2017-11-30 10:56:58 -05:00
6f7bd78ea2 Fixes issue #701
PyLammps now supports thermo_style entries such as c_msd[4]
2017-11-29 01:06:44 -05:00
5647522906 various small cosmetic adjustments to increase conformance with LAMMPS programming conventions 2017-11-28 12:34:23 -05:00
e4b14213b4 delete old log files. new log files are approved by @athomps 2017-11-28 11:35:49 -05:00
fa6fc947f2 fix issues in FixNeighHistory and FixNeighHistoryOMP reported in https://sourceforge.net/p/lammps/mailman/message/36138319/
This supersedes and closes PR #734
2017-11-28 11:28:15 -05:00
e1189381e0 correct documentation for create_atoms rotate
This closes #736
2017-11-28 11:19:19 -05:00
39d24ab7eb ExTeP potential file header update 2017-11-27 21:25:23 +01:00
5770a20e2c added ExTeP to USER-MISC 2017-11-27 21:16:51 +01:00
83ec9815fe Merge pull request #733 from pastewka/17_dump_nc3
BUG: Proper handling of bigint data in NetCDF dump style. Affects LAMMPS version compiled with LAMMPS_BIGBIG.
2017-11-27 11:07:58 -07:00
90ee52296b Merge remote-tracking branch 'andeplane/fix_ave_chunk_bug' into collected-bugfixes
this closes PR #732
2017-11-27 11:45:09 -05:00
f02eb225c6 Merge branch '17_dump_nc3' of github.com:pastewka/lammps into 17_dump_nc3 2017-11-26 22:39:03 +01:00
a111cf640a BUG: Proper handling of bigint data. Corrects behavior when compiled with LAMMPS_BIGBIG. 2017-11-26 22:35:56 +01:00
e755a8339d BUG: openfile is called multiple times, second call stopped code with 'at keyword requires use of append yes' 2017-11-26 22:31:47 +01:00
f7f6a15ac0 MAINT: Removed superfluous code. 2017-11-26 22:31:47 +01:00
36b7aa73aa MAINT: Use proper data type for bigint when defining NetCDF file. 2017-11-26 22:31:47 +01:00
9a5723123f Set peratom_freq in fix ave/chunk 2017-11-21 23:43:52 -08:00
7d07f062b6 Remove const from variable 2017-11-20 10:21:19 -07:00
f3ed148828 Fix for big endian machines 2017-11-20 10:18:53 -07:00
5ba80662c3 Undid the removal of rad in pair_yukawa. 2017-11-17 15:07:59 -05:00
53c1558271 Updated docs for pair_yukawa 2017-11-17 14:21:54 -05:00
8e5d4fa891 Added a KOKKOS-enabled Yukawa pair style. 2017-11-17 14:12:16 -05:00
ec067bde36 fix cut-n-paste error in create_bond docs 2017-11-13 17:59:16 -05:00
adbc75cae6 add alternate log files with the latest version of LAMMPS 2017-11-13 11:52:01 -05:00
dde94c28a7 new example scripts for fix gcmc 2017-11-13 09:07:25 -07:00
f2dc764d1d Merge pull request #723 from lammps/replicate_bbox
Add bounding box to Replicate command
2017-11-13 09:01:38 -07:00
c4c59b909e Merge pull request #716 from akohlmey/collected-small-changes
Collected small changes and bugfixes for next patch
2017-11-13 09:00:26 -07:00
e2e21f0661 Merge pull request #714 from Pakketeretet2/user-manifold-plane-wiggle-fix
User manifold plane wiggle fix
2017-11-13 08:59:40 -07:00
6abf68f614 Merge pull request #712 from akohlmey/linalg-for-latte
Update lib/linalg for use with lib/latte
2017-11-13 08:59:18 -07:00
a97553a92e Merge pull request #709 from abbatux/patch-1
Update pair_smd_tlsph.cpp
2017-11-13 08:58:29 -07:00
dbd4acc4d6 Merge pull request #708 from abbatux/patch-2
Update smd_material_models.cpp
2017-11-13 08:58:07 -07:00
40e776ebc6 Remove OpenMP from KOKKOS_DEVICES in Kokkos CUDA Makefiles since normally this doesn't improve performance 2017-11-10 09:55:11 -07:00
f043212511 USER-DPD: fix a segfault when using constant temperature (DPD vs. DPDE) 2017-11-07 13:57:29 -06:00
4342bcdafc Fix CUDA issue in USER-DPD/random_external_state.h 2017-11-07 09:17:58 -07:00
2e40c00995 add option to the print command to also print to the global universe screen and logfile 2017-11-07 10:00:57 -05:00
f39c6213e1 Change path to nvcc_wrapper 2017-11-06 13:50:16 -07:00
88474fc5c2 Remove Kokkos tpls directory 2017-11-06 13:48:26 -07:00
16b5315845 Update Kokkos to v2.04.11 2017-11-06 13:47:33 -07:00
e337db4059 Replicate bbox from Chris Knight 2017-11-06 11:31:43 -07:00
ba43465268 Merge branch 'collected-small-changes' of github.com:akohlmey/lammps into collected-small-changes 2017-11-06 13:30:08 -05:00
09c61ca598 correct listing of USER-OMP variants of fix rigid styles 2017-11-06 13:29:59 -05:00
0f971bf07c print name of unknown or incorrect variable in error message 2017-11-06 10:41:32 -05:00
5a8c5eb479 provide last input command line with error->one() output 2017-11-06 10:41:01 -05:00