Commit Graph

1071 Commits

Author SHA1 Message Date
09c19a936b update URLs in source code and manual 2021-05-24 14:18:20 -04:00
e584a3b958 Must use explicit scope on virtual functions when called from constructor 2021-05-19 16:57:15 -04:00
7fcd449864 apply clang-format to all headers with some exceptions 2021-05-14 19:16:07 -04:00
aa6c6169a8 Merge branch 'master' into prepare-clang-format
# Conflicts:
#	src/KOKKOS/nbin_kokkos.h
#	src/KOKKOS/nbin_ssa_kokkos.h
#	src/MOLECULE/bond_fene_expand.h
#	src/USER-DPD/nbin_ssa.h
#	src/USER-DPD/nstencil_half_bin_2d_ssa.h
#	src/USER-DPD/nstencil_half_bin_3d_ssa.h
#	src/USER-INTEL/nbin_intel.h
#	src/USER-MISC/fix_propel_self.cpp
#	src/USER-OMP/npair_full_multi_old_omp.h
#	src/USER-OMP/npair_half_multi_old_newton_omp.h
#	src/USER-OMP/npair_half_size_multi_newtoff_omp.h
#	src/USER-OMP/npair_halffull_newtoff_omp.h
#	src/USER-OMP/npair_halffull_newton_omp.h
#	src/USER-OMP/npair_skip_omp.h
#	src/main.cpp
#	src/nbin_standard.h
#	src/npair_full_multi_old.h
#	src/npair_halffull_newtoff.h
#	src/npair_halffull_newton.h
#	src/npair_skip.h
#	src/npair_skip_respa.h
#	src/npair_skip_size.h
#	src/npair_skip_size_off2on.h
#	src/npair_skip_size_off2on_oneside.h
#	src/nstencil_full_bin_2d.h
#	src/nstencil_full_bin_3d.h
#	src/nstencil_full_ghost_bin_2d.h
#	src/nstencil_full_ghost_bin_3d.h
#	src/nstencil_full_multi_2d.h
#	src/nstencil_full_multi_3d.h
#	src/nstencil_full_multi_old_2d.h
#	src/nstencil_full_multi_old_3d.h
#	src/nstencil_half_bin_2d_newtoff.cpp
#	src/nstencil_half_bin_3d_newtoff.cpp
#	src/nstencil_half_bin_3d_newton_tri.h
#	src/nstencil_half_ghost_bin_2d_newtoff.cpp
#	src/nstencil_half_ghost_bin_2d_newtoff.h
#	src/nstencil_half_ghost_bin_3d_newtoff.cpp
#	src/nstencil_half_ghost_bin_3d_newtoff.h
#	src/nstencil_half_multi_2d.h
#	src/nstencil_half_multi_2d_newtoff.h
#	src/nstencil_half_multi_2d_newton_tri.h
#	src/nstencil_half_multi_2d_tri.h
#	src/nstencil_half_multi_3d_newtoff.h
#	src/nstencil_half_multi_3d_newton_tri.h
2021-05-14 15:24:02 -04:00
8617770592 Merge pull request #2511 from samueljmcameron/fix_bd_sphere
Add USER-BROWNIAN package
2021-05-12 13:51:42 -04:00
d8291eea7b Merge branch 'master' into prepare-clang-format
# Conflicts:
#	src/MOLECULE/bond_fene.h
#	src/MOLECULE/bond_fene_expand.h
2021-05-11 21:49:48 -04:00
ee546e2fa3 Merge pull request #2758 from akohlmey/collected-small-changes
Collected small changes and fixes for the next patch release
2021-05-11 19:31:12 -04:00
92c5951d6c Update to latest changes from upstream 2021-05-11 17:49:03 -04:00
af6eae29d4 reformat else statements 2021-05-11 13:42:34 -04:00
3eef759bb1 Merge pull request #2749 from akohlmey/varargs-message-warning
Make warning and info messages vararg compatible and implement "thermo_modify warn"
2021-05-10 13:41:23 -04:00
bffee8dd6a silence compiler warning 2021-05-09 17:44:12 -04:00
09d59a981e fix typo reported on MatSci forum 2021-05-07 07:23:52 -04:00
d1941392d3 disable clang-format for all existing .cpp files (for now) 2021-05-05 23:53:38 -04:00
22e93468d6 simplify code by appling varargs messages and warnings 2021-05-05 18:19:12 -04:00
a23e034ced silence compiler warnings 2021-05-05 16:56:45 -04:00
7f034b2ef7 replace replicated Dihedral/Improper problem warning with function in base class 2021-05-05 16:54:40 -04:00
9f4da1128b remove optional logflag argument from Error::message() and Error::warning() 2021-05-05 16:02:51 -04:00
ad8dc606e9 protect style macros in headers 2021-04-30 15:14:41 -04:00
a1665fddc8 next iteration of preparing for clang-format 2021-04-30 13:51:14 -04:00
04ee87af0c Merge branch 'master' into prepare-clang-format 2021-04-30 13:29:45 -04:00
6f5881e151 Merge pull request #2710 from msvbd/dpd_extended
Generalized DPD pair styles: dpd/ext and dpd/ext/tstat
2021-04-30 13:26:16 -04:00
980244dd0c add protection comments 2021-04-27 22:31:01 -04:00
6b04ebd617 Merge branch 'master' into varargs-log-error-functions 2021-04-26 13:27:58 -04:00
e9e0bb71b6 Use varargs version of Error:all() and Error::one() where applicable 2021-04-25 21:30:51 -04:00
4738337e47 update/trim list of include files according to the IWYU principle 2021-04-24 13:22:39 -04:00
d60c630e56 cosmetic changes: whitespace and include file order 2021-04-23 15:05:06 -04:00
49b540381c Merge branch 'master' into dpd_extended 2021-04-23 15:03:03 -04:00
2e63d126e3 change dir to MISC 2021-04-23 15:49:11 +02:00
ec7d3410f3 add or correct some more LAMMPS header comments 2021-04-22 22:26:27 -04:00
df7fe4431f make LAMMPS homepage URL and C++ indicator comments consistent 2021-04-22 21:26:07 -04:00
d2cdb318ab apply new logmesg() overload to a bunch of cases. 2021-04-21 23:38:45 -04:00
4ed57cb757 Merge pull request #2705 from akohlmey/collected-small-changes
Collected small changes and fixes
2021-04-16 17:07:39 -04:00
75579fc100 take advantage of having the common Command base class to unify code paths 2021-04-14 07:05:00 -04:00
b53822da46 provide Command base class in command.h for deriving command styles from 2021-04-13 17:47:00 -04:00
3b2c0871cc add and use Neighbor::modify_params() convenience function 2021-04-13 14:53:03 -04:00
183b30abd7 use strmatch() consistently to detect respa and verlet runstyles with optional suffix 2021-03-30 18:30:22 -04:00
9058216a54 silence compiler warnings 2021-03-29 14:11:56 -04:00
180d2895c4 Merge pull request #2678 from akohlmey/collected-small-changes
Collected small changes and fixes
2021-03-29 14:05:08 -04:00
1e3f1c584c simplify by using utils::strdup() fmt::format() and reorder includes 2021-03-29 08:12:37 -04:00
806f4e73ed make dihedral style table/cut a derived class from table and remove redundant code 2021-03-29 07:32:43 -04:00
e481eb1154 simplify by using utils::strdup() fmt::format() and reorder includes 2021-03-29 07:29:14 -04:00
b32570c15e simplify by using utils::strdup() and reorder includes 2021-03-28 22:22:13 -04:00
0b73ab96d2 avoid replicated code, consolidate variables and element mapping 2021-03-27 12:09:36 -04:00
ca1496e028 simplify 2021-03-22 21:36:25 -04:00
dd0d06e373 fix a few more issues in USER-OMP and update indentation 2021-02-24 20:45:07 -05:00
09192d63a5 plug another memory leak 2021-02-24 19:56:12 -05:00
c401d21c38 update include statements to follow conventions 2021-02-24 19:49:11 -05:00
4245614c0d plug memory leaks 2021-02-24 19:15:02 -05:00
7efacdc911 correctly handle the case of n=1. clean up some ugliness 2021-02-24 18:37:39 -05:00
d26c744e54 should use ev_init() not ev_setup() 2021-02-09 09:17:08 -05:00