Commit Graph

31284 Commits

Author SHA1 Message Date
81d0165c5c Merge pull request #3181 from jibril-b-coulibaly/new_damp
Damping fixes for finite-size particles simulations
2022-03-24 11:08:02 -04:00
79c047487d fix parallel execution bug for shell command 2022-03-24 07:38:44 -04:00
4278ff8205 update threebody example 2022-03-24 07:32:30 -04:00
ac5acb9abf update threebody example 2022-03-24 07:31:02 -04:00
87fbbd3b13 small kokkos fixes from upstream 2022-03-24 07:18:24 -04:00
8ac0ec6473 Changes needed to compile LAMMPS with latest Kokkos develop 2022-03-24 06:09:03 -04:00
383f0adc94 update version strings for patch release 2022-03-23 19:44:14 -04:00
d8d12ccf1c Merge pull request #3180 from akohlmey/strtok-parsing-refactor
Refactor files to replace parsing with strtok() to use tokenizer classes
2022-03-23 19:40:39 -04:00
6e959b6f43 more robust response to >COORDS command 2022-03-23 17:21:00 -06:00
a3beb063a3 update and simplify parsing of STL mesh using LAMMPS utilities 2022-03-23 18:41:17 -04:00
66f97ef6bc whitespace 2022-03-23 17:22:46 -04:00
a4018dbb4b update MDI library to version 1.3.0 2022-03-23 17:18:19 -04:00
92a968a8a9 Resolving merge conflicts 2022-03-23 14:28:27 -06:00
07cec37786 add Note to damping/cundall documentation about fix order. Remove fix order warning from fix viscous/sphere 2022-03-23 14:59:43 -05:00
42dd772455 more work on plugin mode 2022-03-23 13:45:20 -06:00
f95aaf5898 update settings 2022-03-23 15:15:51 -04:00
d785483c4c update potential file parsing in pair style meam/spline and meam/sw/spline 2022-03-23 15:09:31 -04:00
61f28aea36 add "rewind()" member function to Text and Potential file reader classes 2022-03-23 14:44:50 -04:00
67329b6fff fix KOKKOS bug 2022-03-23 14:40:17 -04:00
9417e41676 Rename sphere/bpm, remove bond instance, add smooth option 2022-03-23 11:41:27 -06:00
c4425a1b0e debugging plugin mode 2022-03-23 11:17:51 -06:00
2ab9aa3cdc dummy commit to trigger resolving github inconsistency 2022-03-23 11:16:54 -04:00
59eca42127 synchronize format handling and fix/compute/variable checking with dump custom 2022-03-23 10:57:52 -04:00
a208f1fc39 minor tweak to one style thermo output for keeping columns straight 2022-03-23 10:48:15 -04:00
ae41996967 add support for determining damping scale factor from atom-style variable 2022-03-23 10:43:26 -04:00
ace6c67697 Copy .h & .cpp from compute_fep for comparison 2022-03-23 22:26:44 +08:00
1fd699d279 enable and apply clang-format 2022-03-23 05:06:15 -04:00
b6e37c828e move fix viscous/sphere to EXTRA-FIX package 2022-03-23 05:02:32 -04:00
e247c1a4d0 update related commands 2022-03-23 04:57:49 -04:00
4a5f5b9980 Merge remote-tracking branch 'github/develop' into new_damp 2022-03-23 04:47:52 -04:00
23461d4ba8 spelling 2022-03-23 04:47:48 -04:00
8acba74c4d correct input to load potential file from local folder 2022-03-22 22:32:39 -04:00
34bcbdf41d update extep potential file 2022-03-22 22:31:48 -04:00
9d500280c9 more tweaks for extep potential file 2022-03-22 22:21:23 -04:00
c18236216b add MPI_Group_free() support to STUBS 2022-03-22 21:54:36 -04:00
0bd8500da3 whitespace 2022-03-22 21:47:26 -04:00
31f0d5c056 Merge remote-tracking branch 'github/develop' into strtok-parsing-refactor 2022-03-22 21:44:15 -04:00
8ef9eae60a update potential file parser in pair style extep 2022-03-22 21:43:26 -04:00
080662683d use tokenizer to read neb initial replica files 2022-03-22 20:54:42 -04:00
3e7de83e6e Merge pull request #3179 from akohlmey/thermo-refactor-plus-yaml
Refactoring of Thermo class and new thermo style yaml
2022-03-22 20:17:25 -04:00
4c13f99b04 convert to use LAMMPS' tokenizer and potential file reader classes 2022-03-22 17:59:53 -04:00
1ee40f8f8f change to tests 2022-03-22 11:11:43 -06:00
194751e800 add support for full minimizations 2022-03-22 09:32:31 -06:00
eb44b6b1fa Merge branch 'develop' into mdi-expand 2022-03-22 08:39:24 -06:00
6555c7302d debugging for series of calcs 2022-03-22 08:38:39 -06:00
d3ba1af89c rename cundamp to damping/cundall 2022-03-22 09:01:53 -05:00
2e539918c1 slight change in __init__.py to fix *.a bug 2022-03-21 22:55:28 -07:00
862e4ba67a Added different pytorch modules that allow different handling of element types and proposal for __init__.py bug fix 2022-03-21 22:45:28 -07:00
8954ac4f20 correct/simplify for GPU device specialization 2022-03-21 17:12:43 -04:00
643511294e create fix for rotational viscous damping on spheres. create fix for Cundall type damping for granular simulations 2022-03-21 15:34:04 -05:00