Commit Graph

31284 Commits

Author SHA1 Message Date
f7514ce358 make friends for access to instance_me member 2022-03-02 19:06:08 -05:00
bd6ac3ee6d for 2d systems, rigid bodies always have a moment of inertia and no DOFs need to be subtracted 2022-03-02 16:41:35 -05:00
0a2a252f08 cleanup 2022-03-02 10:42:41 -07:00
30517fad68 Remove unnecessary atomics/duplication 2022-03-02 10:34:49 -07:00
bac85c4c83 cleanup 2022-03-02 10:04:35 -07:00
083d166885 More cleanup 2022-03-02 09:46:25 -07:00
adefb287c5 whitespace 2022-03-02 09:29:07 -07:00
4ad27034f2 Small tweaks, cleanup 2022-03-02 09:04:13 -07:00
7fb684b802 for 2d systems, rigid bodies always have a moment of inertia and no DOFs need to be subtracted 2022-03-01 21:18:51 -05:00
2a0e66164e enable and apply clang-format 2022-03-01 21:06:19 -05:00
092720b69a correctly compute bond count for shake statistics 2022-03-01 20:52:07 -05:00
e79e4c0134 Seperate buildlists half into 'cheap' blocking-based preprocessor, and 'dense' finalizer
Change-Id: Ic205c1e6f3578c033ec4d8c3c45070fd5b3d7a18
2022-03-01 14:51:40 -05:00
4c57b8f1db Remove duplicate etypes setting 2022-03-01 19:44:17 +00:00
7cca49b14b hide pow behind conditional
Change-Id: I8bb3f7a069207dd0e5a5b980d2a7e3e1a7e22ccb
2022-03-01 12:52:55 -05:00
0edda42eee Bugfix macro inversion 2022-03-01 17:58:56 +01:00
09e544cb8c Changed label of compute_angles/dihedrals for better reading. compute_dihedrals is not working ATM. Also implemented some changes from AThompson. 2022-03-01 16:58:14 +01:00
cd9d3ae5d3 Merge branch 'Elastic_stress' of github.com:Bibobu/lammps into Elastic_stress 2022-03-01 11:04:39 +01:00
798975b809 Merge pull request #3155 from akohlmey/collected-small-changes
Collected small changes
2022-02-28 15:18:27 -05:00
9f315fc2e2 small rewording 2022-02-28 12:17:20 -05:00
763f8f432f Merge pull request #3156 from stanmoore1/kk_verlet_uvm
Fix rare bug in Kokkos with CUDA UVM
2022-02-28 12:16:28 -05:00
bd4d1b52f9 Merge branch 'develop' into collected-small-changes 2022-02-27 19:33:04 -05:00
b76a7764fd use new API to get access to intel fix 2022-02-27 15:19:34 -05:00
0ddefb3754 trigger building an intel style neighbor list so that buffers are allocated 2022-02-27 14:51:17 -05:00
27ca0a8f41 trigger building an "intel" style neighbor list so that buffers are allocated 2022-02-27 14:50:48 -05:00
f688b9b6b5 use consistent names, avoid memory leaks, fix off-by-1 error in fourier dihedral 2022-02-27 12:25:32 -05:00
bc9e45ca5a use consistent names, avoid memory leaks, fix off-by-1 error in fourier dihedral 2022-02-27 12:24:37 -05:00
7824e43339 Change Update::reset_timestep() API so that rerun can bypass the time depended fix check 2022-02-27 11:35:34 -05:00
e287ef6ff9 Merge pull request #3154 from akohlmey/use-setuptools
Refactor python/install.py and 'make install-python' to use setuptools and build a binary wheel
2022-02-27 11:32:05 -05:00
750e0435a8 add link to code design page and update/clarify a couple of things 2022-02-27 11:29:20 -05:00
94f97be6e9 link Modify overview paragraph to Code design page 2022-02-27 11:29:19 -05:00
06f4ae0f1f ignore wheel files 2022-02-27 07:03:02 -05:00
0be14d4ed8 move basename operation from setup.py to install.py 2022-02-27 07:02:39 -05:00
7c11d1675d fix bug with make install 2022-02-27 06:33:22 -05:00
7fd41bea6a add some comments to the refactored scripts to explain technical details 2022-02-25 20:10:13 -05:00
27c1ed86fa Added some self-citations for key contributors 2022-02-25 17:03:45 -07:00
014ad94479 Fix rare bug in Kokkos with CUDA UVM 2022-02-25 16:45:58 -07:00
96fbbc2b1b Merge branch 'log-pizza-updates' of github.com:aliehlen/lammps into log-pizza-updates 2022-02-25 18:35:08 -05:00
3e01fa49dd emulate using '-i' command line flag 2022-02-25 18:34:45 -05:00
d26f953a0a Made the example match the benchmark of Kluge et al. 2022-02-25 15:25:47 -07:00
16c61b3cc0 add support for plumed 2.6.5, 2.6.6, 2.7.3, 2.7.4, and 2.8.0 (default 2.7.4) 2022-02-25 16:37:00 -05:00
11ba2adbe7 add support for plumed 2.6.6, 2.7.4, and 2.8.0 (default 2.7.4) 2022-02-25 16:34:37 -05:00
1dbff92eeb spelling 2022-02-25 16:23:48 -05:00
578a7cc54c document and handle the case of a previous distutils installation.
in this case 'make install-python' should not continue but instead
it now aborts and asks the user to do a manual uninstall
2022-02-25 16:10:46 -05:00
bb3a5b4057 update docs 2022-02-25 14:13:03 -05:00
511678017e update inline docs and add -n/--noinstall flag to skipp installation 2022-02-25 13:44:47 -05:00
033045a534 need to check if virtualenv creation failed and exit with a suitable error message 2022-02-25 13:20:34 -05:00
5ba6eb474c try to appease coverity scan 2022-02-25 12:20:08 -05:00
f0260c3395 restore exception handling with enforce --user install for older pip versions that don't do that automatically 2022-02-25 09:33:26 -05:00
257805d325 make prompt name consistent 2022-02-25 09:32:41 -05:00
6ab247e7f8 no need to create a virtualenv inside a temporal virtualenv 2022-02-25 09:12:01 -05:00