Commit Graph

6220 Commits

Author SHA1 Message Date
7c6353731e Merge pull request #1938 from akohlmey/doc-remove-backslash-underscore
Remove unneeded escapes in documentation source files
2020-03-13 21:01:04 -04:00
f1cc6c6e57 Merge pull request #1928 from akohlmey/collected-small-fixes
Collected small fixes and updates for the next patch release
2020-03-13 19:44:04 -04:00
6805113780 some more typesetting improvements 2020-03-13 19:41:33 -04:00
097a4fb52e Merge branch 'doc-lammps-highlights' of github.com:rbberger/lammps into doc-remove-backslash-underscore 2020-03-13 18:39:40 -04:00
cdec46ba6a Some more code-blocks instead of parsed-literal 2020-03-13 18:38:47 -04:00
e4d6214d3b reformat source 2020-03-13 18:08:47 -04:00
f11e431300 some updates to building with cmake 2020-03-13 18:07:49 -04:00
8063088149 fix a couple of settings 2020-03-13 18:07:32 -04:00
cf21affd38 Add special highlights for commands which use IDs 2020-03-13 17:31:08 -04:00
0c0308db3e some more fixups 2020-03-13 17:02:59 -04:00
a990f1dc89 some minor fixups 2020-03-13 16:42:08 -04:00
0b88950e03 replace '\_' with '_' in plain text where possible 2020-03-13 16:34:57 -04:00
4e525f1d56 PPPM in USER-INTEL does not support triclinic cells 2020-03-13 15:30:52 -04:00
1554aef454 Avoid syntax highlighting in blocks that don't specify language 2020-03-13 15:25:11 -04:00
010b1f7434 more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
4f0e9e2d26 some cleanup and consistency improvements in MESSAGE package code and docs 2020-03-12 06:51:06 -04:00
524b37598f correct various misspelled words and remove corresponding false positives 2020-03-12 06:25:42 -04:00
1372c20d94 Merge branch 'DOI' of github.com:e-kwsm/lammps into doc-cleanup 2020-03-12 05:43:44 -04:00
8af9d40392 Update DOI resolver
https://www.doi.org/doi_handbook/2_Numbering.html#htmlencoding
2020-03-12 16:53:24 +09:00
23a402ddd3 convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
c6f846b925 converter tool for inlining external math is no longer needed 2020-03-12 01:20:30 -04:00
7e656b6cea convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
2775ebeb9d update trilinos URL 2020-03-12 00:47:00 -04:00
8a799c4b5f update cslib URLs to use https:// 2020-03-12 00:46:50 -04:00
30817162b9 update moltemplate URL to https:// 2020-03-12 00:42:23 -04:00
2c3d196ce8 remove broken link 2020-03-12 00:41:57 -04:00
3317f90940 update plumed URLs to use https:// 2020-03-12 00:32:44 -04:00
b961aa0542 update lammps.sandia.gov URLs to use https:// 2020-03-12 00:28:28 -04:00
6dd9a507ef update PyMol URLs 2020-03-12 00:21:20 -04:00
23569e67a0 update Ensight URL 2020-03-12 00:20:59 -04:00
e58aeebcce update URLs for pizza.py homepage 2020-03-12 00:13:58 -04:00
667c9f2a9f update AtomEye related URLs 2020-03-12 00:08:57 -04:00
d0f57289fc finish updating docs for fixes using code-block plus a few other improvements 2020-03-11 12:58:57 -04:00
5029bc9e1e more conversions from parsed-literal to code-block 2020-03-11 10:19:19 -04:00
8546bb51bf Layout images so they show up side-by-side in html and pdf and adapt to screen/paper size 2020-03-11 10:18:48 -04:00
1f4725d652 replace parsed-literal with code-block where appropriate. typeset keywords in cursive 2020-03-10 16:54:04 -04:00
2d329a8b76 typeset symbols in water model howtos 2020-03-10 16:20:52 -04:00
ae9255e057 collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
e643e88913 remove trailing whitespace from documentation sources 2020-03-10 15:51:06 -04:00
5ffc12ffc0 Merge remote-tracking branch 'github/master' into collected_small_fixes 2020-03-10 15:16:07 -04:00
b9ff623c16 Merge pull request #1920 from jguenole/fire-debug
fire bug fix to avoid crashes due to lost atoms
2020-03-10 15:08:58 -04:00
66c019e78b more explicitly describe how force/virial depend on random numbers 2020-03-10 06:43:13 -04:00
a0fb7c812c Merge branch 'master' into collected_small_fixes 2020-03-09 10:53:42 -04:00
740717d114 add false positives 2020-03-09 10:00:14 -04:00
a6086c279b rename USER-MESO package to USER-MESODPD and update related files and folders 2020-03-09 09:48:49 -04:00
45902772b7 Merge branch 'minimizer' of github.com:yafshar/lammps into collected_small_fixes 2020-03-09 09:15:40 -04:00
ddc36973f0 final reference info 2020-03-06 14:55:52 +01:00
21f2ec3a25 Merge branch 'master' into bond/react-new-examples-and-package 2020-03-05 20:08:19 -07:00
8c48a27c1d fix another display issue in pair style srp docs 2020-03-05 15:39:13 -05:00
c38380afc2 bugfix and small tweak for pair style srp docs 2020-03-05 15:36:15 -05:00