Commit Graph

9320 Commits

Author SHA1 Message Date
7115b890b8 more false positives 2022-10-12 10:27:23 -04:00
d499c2f61b Merge pull request #3474 from stanmoore1/kk_update_3.7
Update Kokkos library in LAMMPS to v3.7.0
2022-10-11 16:30:19 -04:00
3e1acfc500 Update Kokkos Arch in docs 2022-10-10 16:29:55 -06:00
1bc16d8a78 fix spelling and table format issues. re-wrap paragraphs in doc sources. 2022-10-10 17:26:13 -04:00
ali
a38054cf32 change area_per_patch to area/patch 2022-10-10 16:03:09 -05:00
aea3421311 whitespace fixes 2022-10-10 15:26:40 -04:00
ali
ba45678528 DIELECTRIC package doc and example updates 2022-10-10 11:04:04 -05:00
ali
be208f037d quick doc updates 2022-10-10 11:04:04 -05:00
ali
b3fa2b7c4f update of DIELECTRIC package documentation and examples 2022-10-10 11:03:52 -05:00
967c84cb69 Merge pull request #3470 from hammondkd/fortran-further-tinkering
Further extending the Fortran interface
2022-10-05 21:20:06 -04:00
7157643fdd Merge pull request #3315 from yury-lysogorskiy/feature/pace-al
ML_PACE with extrapolation grade / active learning
2022-10-05 20:16:13 -04:00
723255bf7e Merge remote-tracking branch 'github/develop' into fortran-further-tinkering 2022-10-05 10:52:36 -04:00
8be7634b5f Merge branch 'collected-small-changes' into pair-zero-full 2022-10-04 14:36:02 -04:00
90e820e8ec format mpirun/mpiexec consistently 2022-10-04 08:55:53 -04:00
f2b3d8e8c3 use morse interaction energy from bond style morse not pair style morse 2022-10-04 07:02:44 -04:00
4a06559da5 update docs 2022-10-04 05:18:42 -04:00
5508c7f25e Bug fix for pair_style list quartic. 2022-10-04 13:27:32 +08:00
ed8e317ef6 Added quartic function for explicit pair interaction in pair_style list. 2022-10-04 10:40:32 +08:00
82bf23401f Fix whitespace 2022-10-03 12:45:18 -06:00
981f75d92f Example in docs 2022-10-03 12:40:05 -06:00
c82fdd4898 Add docs 2022-10-03 11:57:47 -06:00
94ff9cea4c Revert "update documentation: explain fix_modify pair every N"
This reverts commit 2f231bcd50.
2022-10-03 19:43:37 +02:00
6a2023e7df spelling 2022-10-03 09:55:20 -04:00
d711a51657 Merge remote-tracking branch 'github/develop' into fortran-further-tinkering 2022-10-03 09:37:52 -04:00
dc5324c1db Updated unit tests to use keepstuff; whitespace fixes 2022-10-02 21:26:42 -05:00
db9b59c269 Implemented scatter_atoms and scatter_atoms_subset + unit tests + documentation + typos/edits 2022-10-02 20:32:42 -05:00
c5c21bb36c Implemented, tested, and documented gather_atoms and variants; added RST docs for lammps_scatter_atoms and lammps_gather_atoms and variants (library.cpp); checked for missing atom map in lammps_gather_atoms_subset; fixed bug in keepstuff.f90; fixed docs for extract_variable 2022-10-02 15:28:10 -05:00
c777434b72 use kcal consistently 2022-10-01 21:05:16 -04:00
39ea6ef30e make \AA macro available in :math: for HTML and PDF
use the (newly redefined) \AA macro for Angstrom symbol throughout
instead of either \mathring{A} or AA
2022-10-01 20:58:48 -04:00
69ca7105ef provide some more details about typesetting special characters and math 2022-10-01 20:41:48 -04:00
9c314966ae More spacing 2022-09-30 19:58:56 -05:00
eac855343f Spacing 2022-09-30 19:54:58 -05:00
6dea4d50d6 Fixed oversight in edits to example in Fortran doc page 2022-09-30 19:51:56 -05:00
a323e09822 Merge branch 'lammps:develop' into fortran-further-tinkering 2022-09-30 19:40:32 -05:00
bbc08bbf1f make capitalization consistent 2022-09-30 19:53:11 -04:00
953c3d0cad spell check; updated false positives; whitespace 2022-09-30 18:50:16 -05:00
c61b356a71 clarify LJ energy function component of the quartic bond style 2022-09-30 19:48:56 -04:00
b48868d70b better document format style variable behavior 2022-09-30 15:05:56 -04:00
fce0877cac update and remove obsolete parts 2022-09-30 09:49:57 -04:00
a7071fea78 Wrote docs for extract_fix,extract_variable; fixed python so it knows about string variables; doc typo fixes; part of extract_variable unit test 2022-09-29 19:28:15 -05:00
09948f11be make equation references explicit since .. math:: + 🏷️ does not work with latex 2022-09-29 13:54:09 -04:00
c6eb6d858b implement numbered equations and equation references 2022-09-29 12:04:43 -04:00
96c0d39be2 Merge branch 'develop' into pdlammps-howto 2022-09-29 10:42:34 -04:00
3ab8f6ea16 Finished docs for everything currently implemented 2022-09-29 09:14:49 -05:00
8e073c3335 reference the Howto from the rest of the manual. Spelling fixes. 2022-09-29 07:43:01 -04:00
777a074744 Convert PDLAMMPS user doc from latex to sphinx 2022-09-29 06:57:52 -04:00
6c0da8cbaf Wrote documentation for extract_fix, extract_variable 2022-09-29 01:07:46 -05:00
6109090d40 Merge branch 'lammps:develop' into fortran-further-tinkering 2022-09-27 20:02:06 -05:00
5da63b1e1d Merge branch 'develop' into feature/pace-al 2022-09-27 14:01:58 -04:00
2f231bcd50 update documentation: explain fix_modify pair every N 2022-09-27 17:15:20 +02:00