Commit Graph

24268 Commits

Author SHA1 Message Date
7f6089e259 Clean up the interface, update the error messages, remove sstream and update to use the fmt::format, update the headers 2020-11-23 08:44:35 -06:00
bb77f294e8 Update the KIM_SupportStatus WARNING message to only appear on master node 2020-11-23 08:44:35 -06:00
b0d2e4c135 Update the vflag_atom based on the intended use in LAMMPS 2020-11-23 08:44:31 -06:00
3f31c69216 Update the vflag_atom based on the intended use in LAMMPS 2020-11-23 08:33:19 -06:00
968ca6f7ba Add missing updates to conventional build system 2020-11-22 02:40:17 -06:00
e1835250c7 missing brace 2020-11-20 13:51:08 -07:00
cbde5619b0 leave placeholder for KSpace in compute centroid/stress/atom 2020-11-20 10:51:33 -07:00
2d69051cdf add documentation for sublo/subhi extracted flags. add corresponding entries to get data type. 2020-11-19 19:24:36 -05:00
f42e907d30 update terminology 2020-11-19 19:06:33 -05:00
371b1a80e3 add support for '-in none' for multi-partition runs from the library interface 2020-11-19 18:58:21 -05:00
9306f8a905 Merge pull request #111 from lammps/master
rebase
2020-11-19 15:29:08 -05:00
7ec7430c6e Update KIM.cmake for kim-api-2.2.0 2020-11-19 13:29:16 -06:00
dba84be75a Update false_positives.txt 2020-11-19 13:52:58 -05:00
7450d9547a add tests for accessing world/universe size and rank with different MPI settings 2020-11-19 13:52:26 -05:00
6acc69ddd2 reformat with clang-format 2020-11-19 13:51:32 -05:00
2a765efc8c bond/react: update map file section
retain old section title for backwards compatibility
2020-11-19 13:50:30 -05:00
c7247aaaaf provide access to universe and world size and rank information. and number of OpenMP threads 2020-11-19 13:49:10 -05:00
949274a2a4 refactor handling of partition arguments so it does not modify the string passed 2020-11-19 13:48:28 -05:00
5aff81946b bond/react: update examples with new keyword 2020-11-19 13:48:11 -05:00
3d7fd453c3 allow extracting variables that are not atom or equal style compatible 2020-11-19 13:47:23 -05:00
aa129bc218 bond/react: update doc terminology
change 'bonding atoms' to 'initiator atoms'
(bonds need not form or break between initiator atoms)
2020-11-19 13:29:55 -05:00
9ea025295d need to define LAMMPS_LIB_MPI to make lammps_open() visible 2020-11-19 11:33:15 -05:00
96dece97ef Merge branch 'master' into mpi_tests 2020-11-19 11:22:58 -05:00
d1af1aa12d Merge pull request #2424 from jtclemm/restart_neigh_hist
Patching neighbor history restarts
2020-11-19 11:13:50 -05:00
96db39f08b Merge pull request #2450 from jrgissing/molecule-custom_id_order
molecule: use user-provided IDs in molecule files
2020-11-18 17:52:16 -05:00
6d0c8e71de Correct assignment of centroidstressflag 2020-11-18 17:51:04 -05:00
5691ec3dfd insure cvflag is zero, other tweaks 2020-11-18 15:05:11 -07:00
61ccccf908 Merge pull request #2462 from akohlmey/replicate-template-fixes
Preserve molecule templates when using "replicate"
2020-11-18 16:48:06 -05:00
c62c907281 doc string tweak 2020-11-18 13:02:07 -07:00
006fae0ee1 one more optimization 2020-11-18 12:52:59 -07:00
3ee6203e5a simplification to Pair::ev_setup() 2020-11-18 12:51:24 -07:00
8ca690acd3 missed one file 2020-11-18 12:22:06 -07:00
0876684780 energy/virial flags with CENTROID enum 2020-11-18 12:17:14 -07:00
7507773ead Merge pull request #2441 from stanmoore1/kk_fix_shake
Add Kokkos support for fix shake and forward comm on Device for fixes
2020-11-18 11:17:57 -05:00
1002383a45 Merge branch 'master' into replicate-template-fixes 2020-11-18 10:37:57 -05:00
898ffc7d80 Merge branch 'master' into reset-invalid-image-flags 2020-11-18 10:36:54 -05:00
ce9d85d11c pbc correction 2020-11-18 13:19:16 +01:00
a40301bc21 Clean up the interface, remove sstream and update to use the fmt::format, update the headers, remove the unnecessary echo function 2020-11-17 11:15:54 -06:00
86d3761ec5 Remove the unnecessary echo function 2020-11-17 11:14:56 -06:00
90b06781db Remove the unnecessary if condition and update the echo 2020-11-17 09:33:46 -06:00
56bf60dd9e Clean up and update to use fmt::format when possible 2020-11-17 08:36:42 -06:00
fc140af115 Add the missing header file, and remove unnecessary fclose 2020-11-17 08:27:18 -06:00
4e2a1efdf9 Fix the white space and indentation 2020-11-17 08:19:35 -06:00
6ff269b1eb Kokkos ReaxFF tweaks 2020-11-16 15:49:37 -07:00
64910d636c Merge pull request #2464 from iafoss/patch-1
bug fix in pair_mesont_tpm.cpp
2020-11-16 16:48:18 -05:00
35035189e6 Replace a few more 2s with VIRIAL_FDOTR 2020-11-16 16:36:06 -05:00
f6a1352be3 Update remaining lines 2020-11-16 16:23:30 -05:00
251dcdf8a2 Make use of ENERGY_ and VIRIAL_ constants 2020-11-16 15:33:15 -05:00
145d688fa4 clairfy docs 2020-11-16 15:09:17 -05:00
746655ed2e Undo more changes to make values match new constants 2020-11-16 11:52:42 -05:00