Commit Graph

49 Commits

Author SHA1 Message Date
67f6adebb7 whitespace fixup with dynamic casts 2022-09-10 13:26:38 -04:00
a7b6dc7b59 initial implementation of minimizer support in fix shake/rattle 2022-04-30 19:03:28 -04:00
200b4f13c7 use dynamic cast instead of c-style cast when casting from base type to derived class 2022-04-10 18:18:06 -04:00
58030009da new math constants: DEG2RAD and RAD2DEG 2022-03-17 19:44:34 -04:00
09c19a936b update URLs in source code and manual 2021-05-24 14:18:20 -04:00
d1941392d3 disable clang-format for all existing .cpp files (for now) 2021-05-05 23:53:38 -04:00
e9e0bb71b6 Use varargs version of Error:all() and Error::one() where applicable 2021-04-25 21:30:51 -04:00
183b30abd7 use strmatch() consistently to detect respa and verlet runstyles with optional suffix 2021-03-30 18:30:22 -04:00
182eb35f1a changes to fixes that use THERMO_ENERGY 2021-01-21 11:32:11 -07:00
adf74b3a22 use https://lammps.sandia.gov based URLs consistently 2020-10-21 16:45:30 -04:00
0f6a34775c Merge branch 'master' into symbolic-atom-constants 2020-09-15 17:44:31 -04:00
f1ef7d85a8 T2345: Replace instances of NULL with nullptr
The following changes have been applied to src and lib folders:
regex replace: ([^"_])NULL ⇒ \1nullptr (8968 chgs in src, 1153 in lib)
Manually find/change: (void \*) nullptr ⇒ nullptr (1 case)
regex find: ".*?nullptr.*?"
  Manually ~14 cases back to "NULL" in src, ~2 in lib
  regex finds a few false positive where nullptr appears between two
  strings in a function call
2020-09-12 09:34:38 -06:00
9d0c3bc665 replace some numeric constants in Atom and AtomVec classes with enumerators 2020-09-11 19:07:55 -04:00
6113169a47 IWYU based include statement cleanup 2020-09-02 17:39:34 -04:00
96d8d12a88 replace calls to force->*numeric() with the corresponding utils::*numeric()
this also removes the now obsolete functions from Force
2020-08-29 20:31:02 -04:00
aab4bc8ac2 update fix restrain to use {fmt} and be 64-bit atom id compatible 2020-06-03 23:43:54 -04:00
c18efdbfa7 initialize pointers in order of definition 2020-05-02 06:29:12 -04:00
c5f6b5c687 one more whitespace fix 2020-04-15 14:29:37 -04:00
6209479797 Removed some tabs
Changed mathjax for multiline formula
2020-03-23 17:57:58 +01:00
0f00bb1ca6 Added new argument r0stop to fix restrain bond
Added new fix restrain lowerbound harmonic
2020-03-23 16:48:08 +01:00
7967cb1133 put implementation header first to avoid issues with mpi.h and lmptype.h with OpenMPI 2019-07-03 06:16:16 -04:00
31cbccda85 continue cleaning up include file lists 2019-06-29 09:37:44 -04:00
4ec05a3389 remove some more trailing whitespace 2018-12-01 08:14:02 -05:00
e9bc939098 Fix more unused parameter warnings (#1076) 2018-08-23 12:22:44 -06:00
b4e5828a60 Update fix_restrain.cpp 2018-05-08 15:36:32 -04:00
16697fc4cb forgot to reduce energies 2018-05-08 10:46:41 +02:00
6960529594 set appropriate flags for computing a vector in constructor of fix restrain 2018-05-08 10:02:10 +02:00
d9d33ac766 add ability to set multiplicity for dihedrals with fix restrain
this introduces an optional keyword, so backward compatibility is preserved.
this closes #884
2018-05-07 07:23:29 -04:00
749f1ff407 Merge pull request #875 from akohlmey/collected-small-fixes
Collected small changes and bug fixes for the next patch release
2018-05-03 11:28:00 -06:00
e4071d7f46 replace C-style include files with their C++ equivalents 2018-04-27 18:00:24 -04:00
26d22a4b7a restrain energy must be incremented. bugfix from robert meissner posted to lammps-users 2018-04-26 10:02:42 -04:00
59dbb49cf9 remove trailing whitespace 2018-03-16 12:37:27 -04:00
f6a819580c pair TIP4P bug fix for cutoffs >> box size 2017-01-06 09:57:27 -07:00
958e3e6a80 sync with Git
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15520 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-29 23:49:20 +00:00
d55f968432 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15203 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-17 23:48:15 +00:00
354e20f431 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
bad19033d0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11250 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-17 18:43:09 +00:00
aa33af4032 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10160 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 19:00:58 +00:00
2dbe3f80a2 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10103 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-27 20:02:55 +00:00
a6eb6e4f84 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9261 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-01-11 16:50:56 +00:00
ef9e700545 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8226 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-06-06 22:47:51 +00:00
17be5191be git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8216 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-06-01 23:29:31 +00:00
14e2ca1696 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8117 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-05-22 13:55:50 +00:00
1217612ab6 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7761 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-02-13 15:33:29 +00:00
f884a7ec85 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7647 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-02-01 16:27:41 +00:00
f90ce18f3d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7133 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-10-20 00:11:49 +00:00
19e8c92a90 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7003 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-09-23 18:06:55 +00:00
9eb5aebed9 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6795 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-08-25 15:30:01 +00:00
158388f66c git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6790 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-08-25 15:07:20 +00:00