Commit Graph

71 Commits

Author SHA1 Message Date
38eb0fa29d Python: add context manager implementation 2021-05-10 18:42:27 -04:00
f375aab2c5 Correct test name 2021-05-10 18:42:27 -04:00
08471cb88e update path to updated log file 2021-04-09 10:29:36 -04:00
5520d6edd7 confirm that no incompatible neighbor lists are found 2021-04-03 10:24:46 -04:00
d3b2ccf9dd numpy version of neighbor list tests 2021-04-02 21:41:26 -04:00
85a5698c1b add find method to neighbor list wrapper classes 2021-04-02 21:41:08 -04:00
c74bb9b56b add more unit tests for neighbor list access 2021-04-02 21:00:26 -04:00
029db1413e Add missing verbose after merge 2021-03-25 21:01:32 -04:00
a193d9d429 fix several issues when using extract_global() from python exposed by tests 2021-03-25 20:34:25 -04:00
b8f02d759a add support for extracting respa levels and timestep values 2021-03-25 20:34:25 -04:00
e0fdd2ad89 correct lammps.extract_global() method for returned arrays which are returned as list 2021-03-25 20:34:24 -04:00
45191e9f7c Refactor and add fix python/invoke tests 2021-03-24 16:33:39 -04:00
1c9c46d2c1 Add tests to cover python command 2021-03-24 15:42:38 -04:00
9d3e37b102 Add more python variable tests 2021-03-24 12:43:47 -04:00
8790ecc141 Refactor existing tests 2021-03-24 11:18:21 -04:00
23c8d8ccfb Use HasSubstr since output order is dependent on buffering 2021-03-23 20:13:39 -04:00
359a369573 Ensure that global Py_UnbufferedStdioFlag is set when PYTHONUNBUFFERED=1 2021-03-23 19:57:45 -04:00
6b24006d43 Use Info::has_package to check for PYTHON support 2021-03-23 19:56:18 -04:00
180e816886 Simplify PythonPackage tests 2021-03-23 19:55:08 -04:00
4c0efceb1e Remove invalid thermo accesses 2021-03-18 14:26:52 -04:00
728b4801fd Use other example for thermo_style multi test 2021-03-08 18:15:43 -05:00
f92089298d Fix bug in AvgChunkReader and add docs 2021-02-25 16:56:19 -05:00
977ba9ff66 Add LogFile and AvgChunkFile readers
Implements changes proposed in #144
2021-02-25 15:32:53 -05:00
0c34810518 lmp.mpi4py will always be false if LAMMPS has been compiled without MPI support 2021-02-17 15:29:33 -05:00
01a05b88b4 avoid memory leak in unit test fixture 2021-02-08 10:43:18 -05:00
95b445a25a must initialized has_exceptions to avoid false positives in unit tests 2021-01-29 18:38:33 -05:00
a2d7d47cac add unittest for python interface of accelerator config introspection 2021-01-16 17:12:29 -05:00
fec52f6a48 make CMake script formatting more consistent 2020-12-29 10:40:39 -05:00
79833f9b83 Merge pull request #2521 from rbberger/python_package
Turn LAMMPS Python module into Python package
2020-12-17 17:06:03 -05:00
162d34d168 Update Python coverage tests 2020-12-15 17:58:41 -05:00
2a763d1713 PythonCommands test fails without exceptions enabled 2020-12-15 15:00:31 -05:00
91f21fcd9e Merge pull request #2487 from akohlmey/collected-small-changes
Collected small changes and fixes
2020-11-30 11:36:23 -05:00
569a000e6b reformat unittest sources with clang-format 2020-11-25 16:51:41 -05:00
7aa45ea816 Add numpy variants of extract_variable tests 2020-11-23 14:14:29 -05:00
ebf3c180c2 Add unit test for extract_global (LAMMPS_DOUBLE) 2020-11-23 13:43:15 -05:00
2ce10cc435 Add unit test for get_thermo 2020-11-23 13:35:17 -05:00
3ddc1e680c Add unit test for extract_variable (atomstyle) 2020-11-23 13:14:15 -05:00
5ff0c3d4f0 Add unit test for extract_variable (equalstyle) 2020-11-23 13:07:00 -05:00
d5169a9dc2 Add Python unit tests for extract_box and reset_box 2020-11-12 12:29:13 -05:00
adf74b3a22 use https://lammps.sandia.gov based URLs consistently 2020-10-21 16:45:30 -04:00
8ab5f3c71a adjust recently added/expanded tests so they skip tests when packages are missing 2020-10-13 15:42:21 -04:00
24cec51e85 add tests for using python invoke and python style variables 2020-10-12 06:17:16 -04:00
6cda1e16ae add test program template for testing the PYTHON package 2020-10-12 02:40:02 -04:00
471acb2ef8 add unit tests for added APIs 2020-10-09 07:16:34 -04:00
22cca93603 Add tests for neighbor list API 2020-10-05 17:34:08 -04:00
b57c8f6b77 Add tests for LAMMPS exceptions in Python 2020-10-02 16:53:41 -04:00
7d07d04989 Use correct library for unit test if LAMMPS_MACHINE_NAME is set 2020-09-20 17:52:24 -04:00
61ce73273b Add missing -u flag for unbuffered PyLammps tests
Addresses issue #2380
2020-09-19 23:07:13 -04:00
6dda562501 skip over uninitialized and internal variables. correctly identify all kinds of boolean values 2020-09-18 23:40:31 -04:00
ab6b69d6bd Add documentation and better autodetect 2020-09-17 16:39:19 -04:00