Commit Graph

22462 Commits

Author SHA1 Message Date
39efd3bb2d Merge branch 'develop' into small-patches 2024-07-19 13:58:52 -06:00
3d4074d574 Accessor for history, ensure saved bonds processed in update/special/bonds 2024-07-19 13:58:16 -06:00
1ed6e153b6 Merge pull request #4214 from jtclemm/rheo
New multiphase fluids package
2024-07-18 18:38:51 -04:00
de95eb907a Clarifying comment on breakage in bond hybrid 2024-07-17 11:53:01 -06:00
a9a896c677 Small doc changes, renaming status variable 2024-07-15 17:19:51 -06:00
046f57625a Merge branch 'develop' into collected-small-changes 2024-07-15 13:10:35 -04:00
0b08ee898c Merge pull request #4218 from robeme/electrode
Bugfixes and improvements for ELECTRODE package
2024-07-15 13:10:09 -04:00
bb15fa53cb Merge pull request #4230 from jrgissing/chunk_related_fixes
docs + minor msd/chunk refactor
2024-07-15 13:08:02 -04:00
1d6959efe6 only print fix reaxff/bonds output during setup the first time 2024-07-15 06:58:05 -04:00
acd7bd111d remove dead code 2024-07-15 06:51:58 -04:00
58513320d3 core files: replace sprintf with snprintf 2024-07-13 15:33:56 -06:00
0e6ff7d70a only call post_force() if it was selected as callback. 2024-07-11 15:02:38 -04:00
c1c1d32136 The post_force callback should also be called during "setup" 2024-07-11 13:32:56 -04:00
b1db2ddb3f store 'nchunk for msd' on first pass
because nchunk can be modified elsewhere
2024-07-06 15:57:18 -04:00
54901eb8a4 remove pointless check 2024-07-06 09:55:41 -04:00
96f2e32591 fix typo 2024-07-05 20:15:30 -04:00
61e391b449 correct check for invalid header keywords 2024-07-05 19:28:04 -04:00
b89bc47626 more thorough checks for molecule file header keywords 2024-07-05 19:10:48 -04:00
6fd962e132 spelling 2024-07-05 16:44:08 -04:00
880aa40d1b add missing header 2024-07-05 16:23:02 -04:00
dacc55b889 Prevent overflow in neighbor output 2024-07-05 16:20:28 -04:00
f0a11dbefd also promote ndatum in MyPoolChunk class 2024-07-05 16:16:04 -04:00
caa1b4a891 promote ndatum to bigint to avoid overflows 2024-07-05 16:12:08 -04:00
8fcde04097 add a "matches()" method to the Tokenizer and ValueTokenizer classes using utils::strmatch() 2024-07-05 15:45:49 -04:00
10e3595b57 separately catch exceptions thrown by new 2024-07-03 22:20:06 -04:00
b6d11b5902 document GSL dependency and provide build instructions for RHEO package 2024-07-03 19:07:19 -04:00
feba9640af not needed anymore 2024-07-03 18:22:27 -04:00
e1232af867 Missing flag and changing dependencies 2024-07-03 16:12:17 -06:00
ece17cf56f Adding rheo make support 2024-07-03 15:30:33 -06:00
17d736c0f9 Merge branch 'develop' into electrode 2024-07-03 15:17:43 -04:00
01502f70a4 print warnings only on MPI rank 0 2024-07-03 15:16:08 -04:00
33490fc402 align with other similar tests in LAMMPS 2024-07-03 15:09:25 -04:00
1f02178263 make exclusion more specific 2024-07-03 09:32:37 -04:00
66552d80da Merge branch 'develop' into rheo 2024-07-03 03:42:44 -04:00
0a6fd5b097 get rid of some evil tabs 2024-07-03 03:41:57 -04:00
993a7cce54 Merge pull request #4215 from lammps/atom-map-bug
Ensure atom map is reset by fix pour and fix deposit
2024-07-03 00:38:33 -04:00
4b8f961098 Updating headers 2024-07-02 14:00:37 -06:00
f633b03602 ensure atom map is reset by fix pour and fix deposit 2024-07-01 09:33:20 -06:00
49c84dbe1e Bugfix virial with fix electrode 2024-07-01 10:05:28 +02:00
f8a7fc787c correct documentation and simplify extracting vector length 2024-06-29 21:32:37 -04:00
6ad0145709 new special variable function is_timeout() 2024-06-29 04:02:33 -04:00
246698d3c2 Timer::_timeout should be double and it should be allowed to have fractions. 2024-06-29 03:43:26 -04:00
1326592f23 Proofing RHEO package 2024-06-28 17:07:23 -06:00
a8c7ebf47d must use the "roots" communicator only on world->me == 0
Thanks to @joshuakempfert. See issue #4210
2024-06-28 14:17:20 -04:00
3c0eaf6870 Moving stress calculation to rheo/prop/atom 2024-06-27 16:57:53 -06:00
d47b9c6571 cosmetic 2024-06-26 21:49:02 -04:00
9d94345f09 Merge branch 'develop' into next-release 2024-06-26 19:50:27 -04:00
4bb71195aa Allow NULL for eta in fix electrode 2024-06-26 12:08:45 +02:00
9ac821b3cb protect against 32-bit integer overflow 2024-06-26 05:07:53 -04:00
da2dc9a154 handle case of no LAMMPS instance or no simulation box 2024-06-26 01:30:14 -04:00