Commit Graph

341 Commits

Author SHA1 Message Date
6a9bb577cf rename "zip" functions to "compress" functions. update related docs 2021-10-07 12:38:11 -04:00
b8d6df6461 add missing platform scope 2021-10-06 20:44:42 -05:00
ec1a55b35b use platform code for reading/writing of compressed text file via a pipe 2021-10-06 15:04:48 -04:00
f641b1c659 final chunk of changes to apply utils::logical() 2021-09-23 07:30:40 -04:00
914f035475 a few more converted commands and updates for unit tests 2021-09-21 17:23:41 -04:00
bca99f684f update list and order of include files from include-what-you-use analysis 2021-09-18 14:16:48 -04:00
707d9f0ad2 use correct data type for MPI calls 2021-09-16 00:11:16 -04:00
1c21560c70 must not clear force array. will segfault in hybrid atom styles 2021-09-10 20:33:49 -04:00
c186b24292 avoid segfaults due to uninitialized data 2021-09-01 21:47:39 -04:00
eaedd9ad48 fix output issues 2021-08-13 06:24:57 -04:00
aeeb79b188 correcting small bug in fix nve/spin 2021-06-29 12:31:50 -06:00
09c19a936b update URLs in source code and manual 2021-05-24 14:18:20 -04:00
e584a3b958 Must use explicit scope on virtual functions when called from constructor 2021-05-19 16:57:15 -04:00
7fcd449864 apply clang-format to all headers with some exceptions 2021-05-14 19:16:07 -04:00
d8291eea7b Merge branch 'master' into prepare-clang-format
# Conflicts:
#	src/MOLECULE/bond_fene.h
#	src/MOLECULE/bond_fene_expand.h
2021-05-11 21:49:48 -04:00
d1941392d3 disable clang-format for all existing .cpp files (for now) 2021-05-05 23:53:38 -04:00
8874f8a63b simplify with new error functions. replace static string buffers. 2021-05-05 21:12:06 -04:00
a1665fddc8 next iteration of preparing for clang-format 2021-04-30 13:51:14 -04:00
980244dd0c add protection comments 2021-04-27 22:31:01 -04:00
31d244dd80 Merge pull request #2727 from akohlmey/refactor-read-lines-from-file
Move "read_lines_from_file" utility function from Comm class to utils namespace
2021-04-26 13:24:24 -04:00
7e7a448a08 remove the old versions of the utility function and use the new 2021-04-24 21:33:36 -04:00
4738337e47 update/trim list of include files according to the IWYU principle 2021-04-24 13:22:39 -04:00
5933750a85 Merge pull request #2717 from akohlmey/collected-small-changes
Collected small changes and bugfixes
2021-04-23 19:59:35 -04:00
5a12baeef9 remove dead code and silence compiler warnings 2021-04-23 15:14:01 -04:00
cbf81a5f9f make detection of styles more specific and still support suffixed versions 2021-04-23 05:15:28 -04:00
92cc30e7ba correctly determine the number of active pair style instances 2021-04-23 05:13:36 -04:00
7bae94cb49 fix cut-n-paste bug detected by coverity scan 2021-04-23 04:39:21 -04:00
df7fe4431f make LAMMPS homepage URL and C++ indicator comments consistent 2021-04-22 21:26:07 -04:00
1c80c9455b whitespace fixes 2021-04-21 14:58:57 -04:00
6cad2ba829 reverting changes in fix precession/spin 2021-04-21 10:55:43 -06:00
b1dd616a2f correcting a small typo in the checks, and adding a note in the
documentation of fix precession/spin about the error if a (0,0,0) vector
is given as an input.
2021-04-21 07:43:00 -06:00
0e38bfb58b adding "division by zero" checks in fix precession/spin 2021-04-21 07:25:12 -06:00
58549fa10d Merge branch 'clean-master2' of github.com:julient31/lammps into STT2 2021-04-19 17:32:16 -06:00
a64378ba5b cleaning-up fix nve/spin and precession/spin 2021-04-19 17:29:47 -06:00
f2096ded96 - improved design of test_problem
- cleaned up langevin/spin
- started doc for stt and hexaniso
2021-04-19 17:09:53 -06:00
e906fae88c whitespace fixes 2021-04-16 17:10:07 -04:00
668b74bc09 Merge branch 'master' into spin-kokkos 2021-04-16 17:08:38 -04:00
75579fc100 take advantage of having the common Command base class to unify code paths 2021-04-14 07:05:00 -04:00
b53822da46 provide Command base class in command.h for deriving command styles from 2021-04-13 17:47:00 -04:00
107d112265 updates for thermo energy output 2021-04-13 09:43:28 -06:00
455bb933c8 adding modifications for more than one fix langevin/spin in fix nve/spin 2021-04-12 16:18:22 -06:00
bb52cf9377 adding mask check for fix prec/spin 2021-04-12 15:01:29 -06:00
573aebf06f adding possibility of one or more fix prec/spin in fix nve/spin 2021-04-12 14:52:47 -06:00
17e6f59463 Merge branch 'spin-kokkos' of github.com:julient31/lammps into spin-kokkos 2021-04-01 11:46:15 -06:00
b34585762b updated sectoring function to account for triclinic cells. I didn't see a triclinic cell error warnings in SPIN/* or KOKKOS/atom_vec_spin_kokkos.cpp files. 2021-04-01 01:00:25 -06:00
183b30abd7 use strmatch() consistently to detect respa and verlet runstyles with optional suffix 2021-03-30 18:30:22 -04:00
39dc3e69ba Commit before pull 2021-03-30 10:35:25 -06:00
dfb18caf5a simplify using utils::strdup(), update order of include files 2021-03-27 16:25:55 -04:00
d26c744e54 should use ev_init() not ev_setup() 2021-02-09 09:17:08 -05:00
33939a0e26 Merge branch 'master' into thermo-energy
# Conflicts:
#	doc/src/fix_ti_spring.rst
#	src/RIGID/fix_rigid_small.cpp
#	src/fix_langevin.cpp
#	src/fix_temp_berendsen.cpp
#	src/fix_temp_csld.cpp
#	src/fix_temp_csvr.cpp
#	src/fix_temp_rescale.cpp
#	src/thermo.cpp
2021-02-08 15:24:29 -05:00