Commit Graph

32967 Commits

Author SHA1 Message Date
01a0cb35a3 modernize calls to access the list of fixes in the Modify class 2022-10-22 08:20:16 -04:00
43e3dc7a9e use inline insertion sort for short array 2022-10-22 08:10:00 -04:00
d038b049c9 avoid superfluous calls to utils::strdup and improve error messages 2022-10-22 08:09:23 -04:00
5725e3cb1d silence compiler warning about not copying the final null byte 2022-10-22 08:08:16 -04:00
4f507b36da Update fix_bond_react.rst 2022-10-22 00:25:00 -04:00
007e6ffd95 bond/react: create atoms error check
check that post-reaction template has 'Coords' section if it has 'CreateIDs' section
2022-10-22 00:16:22 -04:00
165b6b4ba3 add workaround for missing links to fortran functions in sphinx output 2022-10-21 18:55:16 -04:00
b5cd834c8f small sphinx tweaks. require sphinx 5.2 or later. 2022-10-21 18:37:16 -04:00
6d8539e74f tweak for portability 2022-10-21 15:42:11 -04:00
1d69e93330 make Linux behavior default for loading Python shared lib
This adds portability to platforms like FreeBSD
2022-10-21 15:32:55 -04:00
caeaeb5d33 Python support in ML-IAP requires NumPy. Check for it if CMake supports it. 2022-10-21 15:31:41 -04:00
5c4bb611d1 find cythonize executable on recent FreeBSD versions 2022-10-21 11:25:13 -04:00
4d2661433f try to make more portable (in case this ever gets ported to windows) 2022-10-21 09:28:46 -04:00
ef83f78e1e add md5sums for plumed 2.7.5 and 2.8.1, update default version to 2.8.1 2022-10-21 09:28:15 -04:00
12baf65d7a correct implementation of quartic potential in pair style list 2022-10-21 02:25:40 -04:00
b26716c44c a few more updates 2022-10-20 23:11:45 -04:00
df92e5f228 add one more folder to check 2022-10-20 23:11:18 -04:00
92f5c5efa1 check and convert a few more folders and files 2022-10-20 21:04:07 -04:00
146fb30d9d fix up a non-standard location 2022-10-20 20:51:19 -04:00
cccf3f6f78 change email for contacting LAMMPS developers, add to homepage checker 2022-10-20 20:36:03 -04:00
0af2f153de check for and replace *really* old LAMMPS home page URL. apply fixes. 2022-10-20 20:07:12 -04:00
9685689ca6 check for and replace *really* old LAMMPS home page URL. apply fixes. 2022-10-20 18:05:55 -04:00
260db06f3e cosmetic 2022-10-20 17:36:54 -04:00
676dfe0e64 add -nonbuf flag to help output 2022-10-19 14:44:57 -04:00
c898eae40a simplify 2022-10-19 14:31:42 -04:00
ad54268544 silence compiler warning 2022-10-19 14:31:21 -04:00
0382b33c73 preserve suffixp during clear command 2022-10-19 12:08:05 -04:00
761a75329d silence compiler warning 2022-10-19 11:20:34 -04:00
9d081a5916 more adjustments for bogus timer results on Intel OpenCL 2022-10-19 07:39:56 -04:00
2590f9eea4 Update pair_ylz.rst
Corrected some typo in formulations
2022-10-19 18:52:31 +08:00
fc5379206f add versionadded tag 2022-10-19 06:37:45 -04:00
cbec6cdc6c more detailed log message with replicate 2022-10-19 02:44:41 -04:00
f867adc541 GPU Package fix where timing disable could result in event/marker destruction before completion on accelerator during initialization. 2022-10-19 02:16:29 -04:00
51c6eddd0d Fix to make the property list empty for command queues when timing disabled. 2022-10-19 02:15:39 -04:00
d50bb3bffb minor tweak 2022-10-18 15:45:56 -04:00
d3dd394cc5 Merge branch 'develop' into new-pair_style-ylz 2022-10-18 15:43:47 -04:00
450841ca5a spelling and more whitespace 2022-10-18 15:06:53 -04:00
38c24b68ad update examples to match others 2022-10-18 14:48:37 -04:00
b4a65a1932 Merge branch 'develop' into new-pair_style-ylz 2022-10-18 14:42:02 -04:00
53c56fdc82 integrate into manual and source distribution 2022-10-18 14:41:46 -04:00
87f316ee72 reformat, remove accelerator info, correct restrictions 2022-10-18 14:35:22 -04:00
45713e97d4 require that all atoms are ellipsoids. will segfault or worse without 2022-10-18 14:34:46 -04:00
d7b436f833 enable and apply clang-format, 2022-10-18 14:34:23 -04:00
3520584109 add constant for 2^(1/6) 2022-10-18 14:33:10 -04:00
39020379da fix permissions, error docs, URLs, whitespace 2022-10-18 11:53:38 -04:00
78305edf71 delete atomfile style variables with clear command 2022-10-18 07:34:06 -04:00
c10b5b02c0 Merge branch 'develop' into collected-small-changes 2022-10-17 22:40:01 -04:00
b44e353d4a Merge pull request #3489 from hammondkd/doc-fixes
Doc fixes (round 4)
2022-10-17 22:36:55 -04:00
7ac70cedd9 Merge pull request #3488 from weinbe2/feature/tersoff-tune
Improving stability of the performance of Tersoff/Kokkos across compiler and Kokkos versions
2022-10-17 21:26:55 -04:00
a746e4f2c0 update dipole pair style examples and docs 2022-10-17 19:05:17 -04:00