Commit Graph

23866 Commits

Author SHA1 Message Date
3cd028fd01 refactor command to be more flexible and capable 2025-02-08 22:52:19 -05:00
0a8e2f923d add to .gitignore 2025-02-08 18:29:27 -05:00
8a87a6068c use lighter color "silver" 2025-02-08 18:23:57 -05:00
95858bccc6 add region2vmd command 2025-02-08 18:06:12 -05:00
8791b29aa2 give Region2VMD class access to protected members of region style classes 2025-02-08 18:05:57 -05:00
c10219da9e Merge pull request #4451 from akohlmey/next_release
Step version strings for next feature release
2025-02-04 13:31:31 -05:00
113b2e47f0 must set val.iarg before processing any arguments 2025-02-03 22:18:45 -05:00
995d6ab41f Merge branch 'develop' into next_release 2025-02-03 17:55:37 -05:00
848a4300fe Merge branch 'develop' into collected-small-fixes 2025-02-03 14:54:38 -05:00
06506aa23b Merge pull request #4415 from evoyiatzis/patch-2
Allow definition of prism region using equal style variables
2025-02-03 14:50:00 -05:00
22eb984e68 expand deprecation warnings 2025-02-01 22:37:52 -05:00
54832b2091 plug file descriptor leak 2025-02-01 21:33:33 -05:00
38b1efa9d4 fix small memory leak 2025-02-01 20:16:34 -05:00
7f9423a1ee fix small memory leak 2025-02-01 17:48:45 -05:00
d17186a8fa remove multi/old from docs and print deprecation warning when used
also convert error messages to use new error location indicator API
2025-02-01 15:29:27 -05:00
64ec02b87d convert fix ave/correlate/long and fix ave/grid to new error APIs 2025-02-01 09:03:56 -05:00
920337963b reduce compiler warnings from unused variables, modernize a few loops. 2025-02-01 04:48:00 -05:00
52fcfcaab1 fix typo 2025-01-31 22:04:57 -05:00
d96136f23d cstdbool header is deprecated and no longer needed with recent compilers 2025-01-31 22:01:06 -05:00
fdc3823969 fix typo 2025-01-31 21:50:22 -05:00
eb1174b54b try to work around the ambiguity of 0 and null pointers 2025-01-31 21:48:29 -05:00
29b5fce5e4 do not define __INTEL_COMPILER to __INTEL_LLVM_COMPILER instead test for either
This shortcut will create problems for features that do not exist for
the Intel LLVM based compiler.
2025-01-31 21:20:44 -05:00
381f141384 correct some overeager changes 2025-01-31 21:19:13 -05:00
be1be668a2 modernize error messages for processing molecule files 2025-01-31 20:33:47 -05:00
1dc5f8739a bugfix from @jtclem for molecule files with multiple molecule IDs 2025-01-31 20:32:58 -05:00
a83b45c0fb use simpler std::string concatenation instead of implicit fmt::format() processing 2025-01-31 17:49:59 -05:00
9eb3e35255 add error URLs for molecule files 2025-01-31 17:49:49 -05:00
6f6adc05ce reassign error URL numbers to match list in pull request 2025-01-31 17:49:24 -05:00
ac21f24013 update fix ave/correlate for new error message features 2025-01-31 07:32:05 -05:00
2ea86efe67 simplify custom format processing 2025-01-31 07:22:22 -05:00
1df1b3e2fc Merge branch 'develop' into patch-2 2025-01-31 12:22:18 +02:00
4cfa2e4ed9 update fix ave/atom and fix ave/chunk to have errors with position indicator 2025-01-31 04:33:24 -05:00
2c7bd41b7b make error commands more explicit 2025-01-31 04:32:38 -05:00
3f952f53ce avoid segfault without expanded arguments 2025-01-31 04:04:52 -05:00
0c28dfad44 simplify 2025-01-31 04:04:13 -05:00
42e379a8de Merge remote-tracking branch 'github/develop' into add-error-explanations 2025-01-31 03:23:51 -05:00
6d997258e7 Merge branch 'small_fixes' of github.com:stanmoore1/lammps into small_fixes 2025-01-30 15:25:13 -08:00
9bb56d10b3 Move typedef unused for GPUs inside directive to prevent compiler warning 2025-01-30 15:25:05 -08:00
2099dabb49 Remove unused code 2025-01-30 15:16:30 -08:00
030ad0d5af set version string to 4Feb2025 2025-01-30 17:22:28 -05:00
aa9b2b415f remove sometimes misleading and often confusing warning 2025-01-30 16:20:29 -05:00
b98797ec2c Merge remote-tracking branch 'github/develop' into small_fixes 2025-01-30 16:19:38 -05:00
1d286f194e Fix bug in compute_stress_cartesian with periodic boundary conditions 2025-01-30 12:46:34 -08:00
48893236ec Merge pull request #4380 from rbberger/python_computes
Python and library API changes for computes
2025-01-30 14:21:25 -05:00
75b33ac436 Merge pull request #4443 from jrgissing/reaxff/species-issues
Reaxff/species issues
2025-01-30 14:20:01 -05:00
60c4cc08e9 Merge pull request #4448 from Becksteinlab/imdv3-fix
Fix broken IMDv3 `unwrap` option logic
2025-01-30 12:53:39 -05:00
4e3a41dc25 Merge pull request #4446 from jtclemm/small-patches
Miscellaneous small patches
2025-01-30 12:51:50 -05:00
31720b2741 add missing init function to fix python/invoke 2025-01-29 23:53:23 -07:00
48f749fbdd exact copy of v2 unwrap logic 2025-01-29 23:16:44 -07:00
81e10bdd53 unused variable 2025-01-29 20:20:19 -05:00