Commit Graph

2404 Commits

Author SHA1 Message Date
45ede15f1e Merge remote branch 'lammps-ro/master' into lammps-icms
Resolved Conflicts:
	tools/msi2lmp/src/WriteDataFile05.c
2013-07-02 14:20:12 +02:00
4d3c9dfa9d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10208 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-07-01 13:52:11 +00:00
8f2a7e9fe4 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10207 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-07-01 13:50:50 +00:00
0fe180c77a include edits from steve to pair style list. 2013-07-01 11:54:48 +02:00
b2806efe09 remove duplicate entry 2013-07-01 11:47:19 +02:00
7a2f87e326 add docs for new pair style 2013-07-01 10:29:12 +02:00
6553258ee9 Merge remote branch 'lammps-ro/master' into lammps-icms
Resolved Conflicts:
	doc/Manual.txt
	src/DIPOLE/pair_lj_cut_dipole_long.h
	src/MAKE/Makefile.openmpi-omp
2013-06-30 12:41:18 +02:00
31f46ba045 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10206 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-29 21:40:58 +00:00
64a5e8313f git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10204 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-29 21:33:54 +00:00
f665d2d520 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10202 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-29 21:33:35 +00:00
5761414444 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10195 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-29 20:20:02 +00:00
c7183e199a Merge remote branch 'lammps-ro/master' into lammps-icms
Resolved Conflicts:
	doc/Manual.txt
	lib/cuda/Makefile.lammps
	src/MOLECULE/dihedral_charmm.cpp
	src/pair.h
2013-06-29 13:25:29 +02:00
9958dfe267 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10184 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 21:30:18 +00:00
ccf98a2e11 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10180 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 21:20:29 +00:00
253283ba4e git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10179 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 21:17:02 +00:00
a5468f1bce git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10178 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 21:00:54 +00:00
fe83b0a86b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10176 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 20:35:12 +00:00
31b1e0b4bf git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10156 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 17:21:48 +00:00
6ce870afe3 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10154 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 17:19:51 +00:00
6812ed702d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10153 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 17:09:43 +00:00
388c4d9cd6 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10149 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 16:38:40 +00:00
86cba5d3b2 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10145 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 16:03:37 +00:00
2b1e3a30bd Merge remote branch 'lammps-ro/master' into lammps-icms
Resolved Conflicts:
	doc/Manual.txt
	doc/fix_tune_kspace.txt
	doc/group2ndx.txt
	src/DIPOLE/atom_vec_dipole.cpp
	src/DIPOLE/pair_lj_long_dipole_long.cpp
	src/MOLECULE/atom_vec_angle.cpp
	src/MOLECULE/atom_vec_bond.cpp
	src/MOLECULE/atom_vec_full.cpp
	src/MOLECULE/atom_vec_molecular.cpp
	src/PERI/atom_vec_peri.cpp
	src/USER-AWPMD/atom_vec_wavepacket.cpp
	src/USER-COLVARS/README
	src/USER-EFF/atom_vec_electron.cpp
	src/USER-SPH/atom_vec_meso.cpp
	src/atom.h
	src/atom_vec_atomic.cpp
	src/atom_vec_body.cpp
	src/atom_vec_charge.cpp
	src/atom_vec_ellipsoid.cpp
	src/atom_vec_line.cpp
	src/atom_vec_sphere.cpp
	src/atom_vec_tri.cpp
	src/fix_restrain.cpp
	src/force.cpp
	tools/restart2data.cpp
2013-06-28 13:09:52 +02:00
a92e8c271b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10140 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 00:00:58 +00:00
1e4b3bcf87 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10129 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-27 23:48:54 +00:00
3f5e6b3fab git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10128 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-27 23:24:46 +00:00
07c9a7f6a6 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10124 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-27 23:07:29 +00:00
1d29615080 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10122 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-27 22:56:04 +00:00
38112d0063 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10117 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-27 22:45:24 +00:00
3c0e5bf25c git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10109 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-27 21:29:36 +00:00
0d55ad722b undo manybody check in anticipation of steve's modified version. 2013-06-27 22:50:54 +02:00
be719c0b73 remove non-ascii character 2013-06-27 22:42:12 +02:00
0d6f0c69fd git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10102 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-27 19:57:07 +00:00
33e5f0e99a git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10100 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-27 19:43:07 +00:00
a5d55a6f76 documentation update for colvars 2013-06-27 20:26:10 +02:00
31dccbf319 Merge remote branch 'lammps-ro/master' into lammps-icms 2013-06-27 13:16:00 +02:00
ee41bf3c65 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10094 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-26 13:54:51 +00:00
905d93f8c5 doc bugfix from lammps-users mailing list 2013-06-23 14:55:58 +02:00
f3bdaa2823 Merge remote branch 'lammps-ro/master' into lammps-icms 2013-06-19 13:27:07 +02:00
e6d02199ba git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10089 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-18 14:05:06 +00:00
7dff116588 Merge remote branch 'lammps-ro/master' into lammps-icms
Resolved Conflicts:
	doc/Manual.txt
2013-06-18 13:15:56 +02:00
bb5c918345 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10086 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-17 19:16:03 +00:00
e2a69eaab9 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10083 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-17 19:14:15 +00:00
c43fe0a6f6 idiot-proof defining bonds with manybody potentials
add a test to check if manybody potentials are used with bonds
and (default) exclusion flags that cull pairs from the neighborlist.
now careless use of topology data with resulting in excluded
interactions will generate an error. for the few legitimate use
cases, the test can be turned off.
2013-06-17 21:12:04 +02:00
b7efab2277 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10081 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-17 16:08:18 +00:00
fbdc189121 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10079 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-17 15:20:05 +00:00
dd1b0ebbc5 Merge remote branch 'lammps-ro/master' into lammps-icms
Resolved Conflicts:
	doc/Manual.txt
2013-06-15 16:03:01 +02:00
61a1847026 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10076 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-14 14:28:01 +00:00
bdc5a705e9 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10074 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-14 14:27:42 +00:00
268774b0f9 include colvars reference documentation in distribution 2013-06-14 12:21:34 +02:00