Commit Graph

20981 Commits

Author SHA1 Message Date
4a2d3e95cb Replace Atom::count_words with utils::count_words 2020-05-20 15:53:19 -04:00
db46521d64 Add utils::count_words and utils::trim_comment 2020-05-20 15:53:08 -04:00
807130c771 Replace AtomVec::tokenize and use Tokenizer 2020-05-20 15:50:10 -04:00
d41927b056 Add Tokenizer class 2020-05-20 15:49:02 -04:00
8691579def Merge pull request #2098 from lammps/unittest
Add first part of an integrated unit test framework
2020-05-20 15:44:52 -04:00
5281dea651 Merge pull request #2095 from stanmoore1/kk_snap_beta
Fix redundant computation in Kokkos Pair SNAP on GPUs
2020-05-20 15:30:17 -04:00
8bc2c4748c add option to test main program to override the value of the INPUT_FOLDER variable 2020-05-20 15:23:32 -04:00
917b7dd4fa move definition of the INPUT_FOLDER variable from header to implementation file 2020-05-20 15:22:43 -04:00
58ca1dcf8e Merge pull request #2094 from akohlmey/collected-small-changes
Collected small changes and bug fixes for the next patch release
2020-05-20 14:33:34 -04:00
c50bd25d42 Merge pull request #2093 from junghans/lammps_cleanup
remove fftw_cleanup() from main()
2020-05-20 14:26:41 -04:00
2536076ce9 cosmetic changes for consistent source formatting 2020-05-20 07:40:37 -04:00
2712a20f91 build common unit test sources into a static library and link with it 2020-05-20 07:32:32 -04:00
76fb797264 Simplify tests 2020-05-20 04:12:48 -04:00
5533b9233f Fix indentation 2020-05-20 02:48:02 -04:00
ad6ae7317e Use std::make_pair 2020-05-20 02:45:16 -04:00
34456294dd Cleanup 2020-05-20 02:03:00 -04:00
46e0c8b6b7 Remove duplicated read_yaml_file function 2020-05-20 01:32:50 -04:00
73e766b933 Remove another unneeded class 2020-05-20 01:30:34 -04:00
50d4cf210c Remove unnecessary classes 2020-05-19 23:37:11 -04:00
c0acb3a438 Remove multiple definitions of STRINGIFY 2020-05-19 23:15:22 -04:00
c04a71a239 add unit test framework for pair, bond, angle styles from progguide branch 2020-05-19 22:24:31 -04:00
1517daeaed add support for extracting r0 array to bond style zero 2020-05-19 21:54:50 -04:00
16ce10aefc the first argument to Bond::extract() should be const char * not char *. 2020-05-19 21:54:31 -04:00
5827f69da5 OpenMPI's "sm" transport layer has gone from some newer versions. use "tcp" as lowest common denominator 2020-05-19 20:25:53 -04:00
48a9e0d732 consolidate setting CMake policy CMP0074 into main cmake file 2020-05-19 15:20:41 -04:00
16db223d03 update test for whether to set CMake policy CMP0074 is needed. 2020-05-19 11:53:47 -04:00
ffaa77af6b reintroduce bugfix for bessel function distributed random numbers 2020-05-19 09:02:17 -04:00
4ac7a26fe1 add support for extracting r0 array to bond style zero 2020-05-18 19:37:54 -04:00
6b1dbe2393 the first argument to Bond::extract() should be const char * not char *. 2020-05-18 18:15:10 -04:00
93fe33553a need to set CMake policy CMP0074 to NEW behavior also for finding TBB Malloc 2020-05-18 17:50:28 -04:00
8395ec9e43 avoid segfault with eam/intel when using it with a hybrid pair style 2020-05-18 14:31:57 -04:00
c67ca88b04 Fix redundant computation in SNAP on GPUs 2020-05-18 08:42:30 -07:00
9ed2824de8 add missing coulomb tabulation to pair style lj/class2/coul/long 2020-05-15 22:14:08 -04:00
dc74fac4d3 silence compiler warning 2020-05-15 20:04:49 -04:00
fa7319e626 drop fftw_cleanup() completely 2020-05-15 16:57:44 -06:00
b1ee9ad1fe Merge pull request #2091 from stanmoore1/kk_summit
Rename Kokkos Makefile
2020-05-15 17:39:53 -04:00
d39457e46e Merge pull request #2092 from lammps/omega-angmom
Initialize omega and angmom when reading a data file
2020-05-15 17:20:54 -04:00
6f0a56c176 cmake: fftw is now a private dep 2020-05-15 13:42:51 -06:00
58b304be62 move fftw_cleanup() into LAMMPS::cleanup() 2020-05-15 13:30:55 -06:00
f1a9eab5da initialze omega and angmom when read data file 2020-05-15 13:07:34 -06:00
1d52e7f243 Rename Kokkos Makefile 2020-05-15 12:19:16 -06:00
37442ca5cf fix bug in USER-OMP with "pair_modify compute no" and "kspace_modify compute no" 2020-05-15 08:06:23 -04:00
e36d2ce3e6 Do not use -ffast-math by default. Too large a chance of miscompiled code. 2020-05-14 20:48:43 -04:00
87c34fb144 dihedral base class did not initialize suffix_flag member. 2020-05-14 20:48:21 -04:00
20ad924a54 Merge pull request #2082 from stanmoore1/kk_bigint
Fix 32-bit integer overflow in Kokkos neighlist build on GPUs
2020-05-11 20:55:14 -04:00
040cbe378c Merge pull request #2080 from akohlmey/collected-small-changes
Collected small changes for the next patch release
2020-05-11 20:37:59 -04:00
3d0186987d simplify 2020-05-11 18:31:07 -04:00
a6cfe8f642 update Kokkos related documentation about JIT compilation and UVM. 2020-05-11 18:07:51 -04:00
af1aa03446 Merge pull request #2074 from akohlmey/singularity-update
Updates for singularity definition files
2020-05-11 17:44:14 -04:00
b1ac51f721 Fix 32-bit integer overflow in Kokkos neighlist build 2020-05-11 15:11:24 -06:00