4c783ea3b7
Enforce l,ule or l,ole command order for RST
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(cherry picked from commit 79e867c213
2016-09-07 02:16:55 -04:00
9e8256aeb0
Refactored code and escape RST special character '_'
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(cherry picked from commit 4629a464f7
2016-09-07 02:16:55 -04:00
925f1bfb6f
Escape RST special character '^' and take care of special math cases
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(cherry picked from commit 453521c8e6
2016-09-07 02:16:55 -04:00
3f312244a0
Escape RST special character '*' in final output
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(cherry picked from commit 7cb39811d4
2016-09-07 02:16:54 -04:00
55022d1263
replace :l,ule and :l,ole with :l :ule or :l :ole
2016-09-07 02:11:59 -04:00
0d491d483c
avoid Inline substitution_reference start-string without end-string
2016-09-07 02:10:49 -04:00
a31c507370
correct error message text, sync with source
2016-09-06 22:15:49 -04:00
fc2d878305
update manual introduction to represent current status. correct some markup to better pass through sphinx
2016-09-06 21:20:47 -04:00
1c17b98500
Merge branch 'integration' into doc-corrections-and-updates
2016-09-06 20:19:02 -04:00
ace5dc3c7c
Merge remote-tracking branch 'lammps-rw/clean-up-docs-for-sphinx' into clean-up-docs-for-sphinx
2016-09-06 19:54:35 -04:00
0252347d43
sync with 7Sep16 patch
2016-09-06 17:00:32 -06:00
c9455c90de
Merge pull request #20 from akohlmey/lammps-contribute
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Update description of submitting contributions to LAMMPS
2016-09-06 16:55:16 -06:00
1e4d6fee93
Merge pull request #19 from akohlmey/clean-up-docs-for-sphinx
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Clean up docs for sphinx (redo)
2016-09-06 16:54:39 -06:00
42db93e198
one more small correction to document recent fix ave/time changes
2016-09-06 16:10:16 -04:00
906bd24543
fix typos
2016-09-06 16:03:16 -04:00
4f88c75401
update the discussion on how to submit modifications
2016-09-06 16:02:59 -04:00
1a7b04e8a6
generate updated html files for corrected .txt files
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(cherry picked from commit 7de57ffd94
2016-09-06 13:40:11 -04:00
fbc955e549
correct link targets
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(cherry picked from commit ff75cf51bb
2016-09-06 13:40:11 -04:00
3bb3c1a45c
add pppm/kk and fix reax/c issues
2016-09-06 10:46:51 -06:00
c543cba95c
Merge pull request #18 from akohlmey/clean-up-docs-for-sphinx
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Clean up incorrect link targets in documentation
2016-09-06 10:31:33 -06:00
431d1a6dae
mention stable releases
2016-09-01 02:37:55 -04:00
ab84acc2cd
synchronize LAMMPS developer list with webpage and move ray to "past"
2016-09-01 02:26:49 -04:00
fc093a0aab
replace :ule,l and :ole,l with :l<br>:ule and :l<br>:ole
2016-09-01 02:07:16 -04:00
5e6dff36e4
add new commands to lammps.book
2016-09-01 02:01:47 -04:00
7de57ffd94
generate updated html files for corrected .txt files
2016-09-01 00:02:40 -04:00
ff75cf51bb
correct link targets
2016-09-01 00:01:26 -04:00
fb2c18ee88
Merge pull request #17 from akohlmey/small-doc-fixes
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corrections for various compute something/chunk examples
2016-08-31 19:57:36 -06:00
b5c758f22c
Merge branch 'goo' into integration
2016-08-31 19:53:50 -06:00
de0036fafd
removing searchindex.js
2016-08-31 19:52:28 -06:00
c3c9788dc7
include autogenerated html code
2016-08-31 21:49:06 -04:00
2abd5ad28a
Merge branch 'integration' into small-doc-fixes
2016-08-31 21:42:22 -04:00
1c3302d1db
Merge pull request #15 from rbberger/pylammps-improvements
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PyLammps improvements
2016-08-31 16:34:59 -06:00
24409b6178
Merge branch 'error' into integration
2016-08-31 16:16:47 -06:00
de21cb2cd5
small changes to doc page
2016-08-31 16:16:43 -06:00
639ab0fd3e
Merge branch 'core/cpp_exceptions' of https://github.com/rbberger/lammps into error
2016-08-31 16:11:08 -06:00
6c65af710c
bad file?
2016-08-31 16:10:20 -06:00
29e480ad66
corrections for various compute something/chunk examples
2016-08-31 17:31:14 -04:00
7c01ef57ee
sync with SVN
2016-08-31 15:17:00 -06:00
0316bb579b
Merge pull request #3 from akohlmey/fix-flow-gauss
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Fix flow/gauss for USER-MISC package
2016-08-31 15:03:27 -06:00
f89448d73c
Merge pull request #6 from akohlmey/manifold-doc-update
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Small update for USER-MANIFOLD docs.
2016-08-31 14:53:16 -06:00
ad879d97db
sync w/ SVN
2016-08-31 14:29:44 -06:00
4051aedf2c
Merge branch 'small' into integration
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Conflicts:
src/compute_omega_chunk.cpp
2016-08-31 13:58:12 -06:00
ec8b9e21db
sync with SVN
2016-08-31 13:28:26 -06:00
1986eda4d5
Remove no longer needed generated files in doc
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If we use the Google Custom Search API, we do not need to keep the
generated searchindex.js file anymore. We also can safely remove
the _sources directory for good.
Since these get generated during each Sphinx build, additional
steps have been added to the Makefile to get rid of them. They
are also added to .gitignore to avoid commiting them by accident.
2016-08-31 00:36:56 -04:00
e71fafdd25
Use Google Custom Search API for searching in docs
2016-08-31 00:28:27 -04:00
6cbdad7a97
Add utility function to IPyLammps for embedding videos
2016-08-30 11:34:16 -04:00
a08cf7a4b6
Add verbose option in PyLammps methods
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This option allows forcing LAMMPS output to be printed to the console.
2016-08-30 11:34:16 -04:00
691de01b33
Allow setting the position of atoms
2016-08-30 11:34:16 -04:00
33a87a470a
Return 2D vectors in 2D cases
2016-08-30 11:34:15 -04:00
59dc83eadb
Fix resource leak
2016-08-30 11:34:15 -04:00
