0d9a2808b4
Merge branch 'progguide-updates' of github.com:lammps/lammps into progguide-axel
2020-09-30 19:50:00 -04:00
6928e79883
Merge pull request #2395 from rbberger/collected-small-fixes
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Fixes issues found via Static Code Analysis and from bug reports
2020-09-30 19:23:52 -04:00
4b71e1cbda
initial library doc page edits
2020-09-30 15:37:11 -06:00
e4cfb91169
discuss that USER-MESONT package potentials are not bundled and provide URL
2020-09-29 16:57:19 -04:00
54c4b95c4d
small format tweak
2020-09-28 14:09:03 -04:00
b1f6a6799c
Merge remote-tracking branch 'github/master' into coul_tt
2020-09-28 13:56:00 -04:00
8bc67f17cc
fully integrate pair style coul/tt into manual
2020-09-28 13:46:53 -04:00
405c1b98c5
remove inactive code and documentation for dump image persp option
2020-09-28 08:19:26 -04:00
d868271b01
remove unneeded escapes from input examples
2020-09-28 07:52:38 -04:00
9d39587d37
expand c-library properties example
2020-09-27 19:05:40 -04:00
b11b420b08
small doc update for singularity
2020-09-26 22:30:05 -04:00
5e110fe707
update docs for autodetected OpenMP compatibility
2020-09-25 16:45:39 -04:00
5489c64aef
remove trailing whitespace
2020-09-25 16:32:54 -04:00
cc5ef652e4
move Using Python with LAMMPS to programmer guide and integrate python module docs
2020-09-25 15:13:05 -04:00
0ffb2ce09c
move Tutorials to bottom of Howto section
2020-09-25 15:12:31 -04:00
5e6d222d29
fix up a few internal references
2020-09-25 14:04:44 -04:00
495438105f
mass renaming of programmer guide files
2020-09-25 13:59:29 -04:00
9a523fef65
add bibliography
2020-09-25 13:48:22 -04:00
089e55cc37
fix typo
2020-09-25 13:48:05 -04:00
28812b1ea7
Merge pull request #2381 from akohlmey/collected-small-changes
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Collected small changes
2020-09-24 16:17:28 -04:00
2f8a5ddd1f
xindy doesn't seem to be required (and is not available on CentOS 8)
2020-09-23 17:13:09 -04:00
b6d98707ec
molecule: revert overzealous error checking
2020-09-23 11:23:10 -04:00
2b30661b07
molecule: correctly update docs
2020-09-23 10:46:23 -04:00
343932f220
document -DLAMMPS_TRAP_FPE
2020-09-23 09:38:07 -04:00
54aacc47ea
add section about citing LAMMPS
2020-09-21 22:40:36 -04:00
0b903fa7c2
bond/react: create-atoms-draft-docs
2020-09-21 14:53:30 -04:00
19bc3d3643
Docs updated
2020-09-21 18:05:57 +02:00
2206de7c68
Examples added, bug fixed
2020-09-21 16:14:33 +02:00
92f8398bed
check more thoroughly for prerequisites to translate the PDF manual. update doc/README
2020-09-19 18:16:52 -04:00
f72fb7290b
fix links
2020-09-19 16:28:20 -04:00
67aeb7a5e5
Merge branch 'move-version-to-lammps' into collected-small-changes
2020-09-19 16:17:01 -04:00
4c51a8ae57
move version and num_ver from Universe to LAMMPS and make num_ver an int
2020-09-19 11:37:08 -04:00
89506efd23
document Pointers class and LAMMPS_NS namespace
2020-09-19 11:16:44 -04:00
73c65d43e1
update list of main folders and descriptions
2020-09-19 02:53:36 -04:00
9030c987e6
tweak formatting and style setting to have the desired structure and layout
2020-09-19 00:54:54 -04:00
a0afb9b554
Merge branch 'master' into collected-small-changes
2020-09-18 18:38:47 -04:00
7580176020
Merge pull request #2376 from giacomofiorin/colvars-update
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Update Colvars to version 2020-09-17
2020-09-18 18:38:17 -04:00
494498df03
update docs on building the PDF version of the manual
2020-09-18 18:27:23 -04:00
906e000e4c
Merge pull request #2368 from jrgissing/bond/react-update_all_charges_default
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Bond/react update all charges by default
2020-09-18 18:17:54 -04:00
33a2857b33
Fix whitespace
2020-09-18 17:56:12 -04:00
3c3b76a781
Restore PDF index
2020-09-18 17:51:51 -04:00
07c9298558
Fix some broken internal hyperlinks in Colvars PDF
2020-09-18 17:24:12 -04:00
d4cd67ce74
tweak format some more and refactor manual sectioning to be logically correct
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now if only there was a way to make the titles of the parts show in the
navigation sidebar.
2020-09-18 17:15:42 -04:00
7deb773440
Update Colvars to version 2020-09-17
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Small changes
Implement global map of components (@HanatoK)
https://github.com/Colvars/colvars/pull/363
Format code examples with colored background (@giacomofiorin)
https://github.com/Colvars/colvars/pull/361
replaced jacobi() with an open-source version (@jewettaij)
https://github.com/Colvars/colvars/pull/360
2020-09-18 17:09:18 -04:00
e1397b9a88
Merge branch 'master' into collected-small-changes
2020-09-18 16:11:47 -04:00
635b7c04a5
Update docs and docstrings
2020-09-18 14:49:25 -04:00
de811db221
address spelling issues
2020-09-18 14:13:35 -04:00
ae9abf0f7d
correctly update docs
2020-09-18 14:10:32 -04:00
e0b22a51da
Doc updates
2020-09-18 12:35:07 -04:00
1afb355d09
Limit int types to LAMMPS_INT and LAMMPS_INT64
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Keep LAMMPS_TAGINT and LAMMPS_BIGINT internal to LAMMPS.
An external caller now only needs to distinguish between 32 and 64bit
integers, doubles and C strings.
2020-09-18 12:05:37 -04:00
