Commit Graph

4586 Commits

Author SHA1 Message Date
cb77555fa6 update title in reference to accelerator section 2021-10-11 17:26:24 -04:00
1f4c50037b Merge branch 'master' into acks2_release 2021-10-11 16:13:20 -04:00
70cbb72e42 Merge branch 'master' into acks2_release 2021-10-11 09:58:44 -04:00
eb6b73c752 update documentation to refer to the new branch names (develop, release) 2021-10-10 04:39:16 -04:00
241e01edba whitespace 2021-10-08 19:00:30 -04:00
3313d3bfa3 make documentation consistent and properly integrate it 2021-10-08 16:24:57 -04:00
fc42992cdf Merge branch 'master' into nm_split_styles 2021-10-08 15:57:17 -04:00
09bcfc2116 document visual studio support 2021-10-08 15:33:49 -04:00
b5061b69be add warning to fix reaxff/species to explain the impact of large averaging 2021-10-07 20:46:01 -04:00
6a9bb577cf rename "zip" functions to "compress" functions. update related docs 2021-10-07 12:38:11 -04:00
059f450f1b add uppercase string utility function (for symmetry) 2021-10-07 00:00:33 -04:00
a9bccee7b2 add utility to convert a string to lowercase 2021-10-06 17:43:41 -04:00
10a8a1b325 add dlerror() call wrapper 2021-10-06 08:59:51 -04:00
6f2076a9b8 update docs 2021-10-05 22:11:19 -04:00
fc5920812f new group arg for delete_atoms porosity 2021-10-05 13:07:34 -06:00
dd2b5b22d4 fix saed/vtk does not use the overwrite option anywhere 2021-10-04 17:22:58 -04:00
69a8dfe4d9 whitespace 2021-10-02 18:12:32 -04:00
37bfe3d0ce integrate platform sub-namespace into source code and documentation
this updates function calls to functions that have been moved from
the utils namepsace or the Info class to platform::
2021-10-02 16:55:11 -04:00
373dbcd9ae fix typo 2021-10-02 16:40:05 -04:00
b5b2f5c03c additional tweak 2021-09-30 17:11:49 -06:00
f20bd63edf clarify doc pages for thermostatting fixes to mention regions 2021-09-30 16:55:22 -06:00
359aa1d805 Merge branch 'master' into acks2_release 2021-09-30 00:26:25 -04:00
56cd66a6c3 Merge branch 'master' into parse-logical-keyword
# Conflicts:
#	src/H5MD/dump_h5md.cpp
2021-09-29 23:05:59 -04:00
2651e6ec2f make C library example work with strict C compilers 2021-09-29 10:37:15 -04:00
81d3eb0b2e add missing keyword 2021-09-29 10:29:09 -04:00
c4616d4a11 Merge pull request #2962 from akohlmey/doc-updates
A few final updates to the LAMMPS manual
2021-09-27 20:39:06 -04:00
913ce25a01 small tweak 2021-09-27 17:13:32 -04:00
9c4a82f286 be more specific about what the name of the LAMMPS executable can be
also provide a few more examples without a machine suffix
2021-09-27 16:50:25 -04:00
9dbd5bb27d copy request to mention lammps.org form home page instructions for citing 2021-09-27 16:49:29 -04:00
d69cb9e847 Changed \n to n \m to m 2021-09-27 14:54:15 -04:00
1e574b3e8a updated pair_nm doc 2021-09-27 14:12:09 -04:00
7601001632 Fix Colvars output files not written with "run 0"
See:
  https://github.com/Colvars/colvars/commit/ff2f0d39ee5
which fixes a bug introduced in:
  https://github.com/Colvars/colvars/commit/1e964a542b

The message applies to NAMD, but the logic used in LAMMPS when handling "run 0" is very similar.

The Colvars version string is also updated, however this commit does not
include other changes, such as the following:
  https://github.com/Colvars/colvars/pull/419
which were not fully completed before the LAMMPS Summer 2021 finalization.
2021-09-27 13:38:30 -04:00
ea030c6dd8 Merge branch 'master' into collected-small-changes 2021-09-26 18:12:40 -04:00
a83797091b Finally added Pair_nm_cut_split and bond_fene_nm_cut_split 2021-09-23 14:05:54 -04:00
46f331095a update some formulations as suggested by @sjplimp 2021-09-23 13:51:06 -04:00
5b02f704cc Finally added pair_nm_cut_split fene_nm_cut_split 2021-09-23 13:23:29 -04:00
16ab49cff4 update citation info with new LAMMPS paper reference and acknowledge it 2021-09-23 11:59:43 -04:00
5ef4913ebb Merge remote-tracking branch 'github/master' into programmer-guide-updates 2021-09-23 11:16:31 -04:00
e79ae552c8 mention how to set the path to the fftw3_omp library 2021-09-22 12:23:20 -04:00
6adac6b637 Merge branch 'master' into parse-logical-keyword 2021-09-20 20:41:48 -04:00
c39d3057dc insert missing atom-ID 2021-09-20 16:14:18 -04:00
5ff881fb0d Change "offsite" to "external" to correct broken URLs to lammps.org 2021-09-20 12:05:52 -04:00
22d7ce564a fix typo 2021-09-20 07:29:10 -04:00
4fcf343227 fix typo 2021-09-18 21:59:31 -04:00
bca99f684f update list and order of include files from include-what-you-use analysis 2021-09-18 14:16:48 -04:00
db76edbade implement utils::current_date() convenience function to reduce replicated code 2021-09-18 09:05:35 -04:00
cef100991f add utils::logical() function to complement the *numeric() functions 2021-09-16 17:52:51 -04:00
0fcc10b635 fix typo 2021-09-16 10:18:49 -04:00
fef8f51d80 refer to "XXX Coeffs" sections consistently 2021-09-15 19:20:47 -04:00
eb80102871 spelling 2021-09-15 13:51:31 -04:00