94f14ab051
spell check, minor typos
2016-11-16 15:34:32 -05:00
4641c9e568
Added basic documentation for grem fix
2016-11-16 13:36:13 -05:00
57124b9b25
update documentation metadata files for recent changes
2016-11-12 09:18:21 -05:00
03b3834fe3
add documentation for pair style agni
2016-11-12 09:07:42 -05:00
1f38e1a771
Merge branch 'master' into doc-updates
2016-11-09 18:18:05 -05:00
9806da69f3
Stan bug fixes for fix reaxc/bonds/kk
2016-11-09 15:47:50 -07:00
c55fd502e0
correct typo in formula
2016-11-09 15:04:24 -05:00
71ee2ecaa1
integrate pair style tersoff/mod/c contributed by Ganga P Purja Pun (GMU)
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This includes docs, added testing and inclusion of USER-OMP support.
2016-11-09 14:52:39 -05:00
bfea3dce7d
Merge pull request #268 from arielzn/born_dsf
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pair styles born/coul/dsf and born/coul/dsf/cs added
2016-11-09 11:57:09 -07:00
2c801320c2
fixed links in Section_intro.txt
2016-11-09 11:46:10 -07:00
a23b287a7a
sync with SVN for creation of stable release
2016-11-08 09:05:50 -07:00
31204aab6a
sync with SVN
2016-11-08 08:57:51 -07:00
25e7d074cf
documentation added for born/coul/dsf and born/coul/dsf/cs styles
2016-11-08 16:51:54 +01:00
3a3d96b877
info styles also prints out pair styles
2016-11-04 18:18:40 -04:00
77bbf03f0f
Merge pull request #252 from akohlmey/preinstalled-vs-scm
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remove the misleading "(which it is by default)" from several doc files
2016-11-04 10:59:06 -06:00
f0131393e0
Merge pull request #248 from akohlmey/collected-small-fixes
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collected small bugfixes and updates
2016-11-04 10:58:42 -06:00
f48b71f46b
added examples/threebody, fix reaxc/speceies/kk
2016-11-04 10:56:04 -06:00
6cc4eb19af
remove the misleading "(which it is by default)" from several doc files
2016-11-04 12:20:17 -04:00
7fdd6e2807
remove work repetitions for 'the'
2016-11-01 11:40:07 -04:00
2e0d304c7e
remove word repetitions for 'a'
2016-11-01 11:36:11 -04:00
d9891abdf4
new library functions
2016-10-27 09:34:04 -06:00
ad5f7c4581
Merge pull request #238 from giacomofiorin/colvars-2016-10-24
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Colvars fixes and small changes
2016-10-25 10:32:41 -06:00
63eada2425
fix issue with docs for orientorder/atom compute reported by @andeplane
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this closes #243
2016-10-25 12:12:48 -04:00
9c81ad1ab6
doc page changes
2016-10-25 09:45:55 -06:00
f8367e3d0f
update documentation pdf for updated colvars lib
2016-10-24 17:49:53 -04:00
2cf77ff778
Add support for ebook generation in ePUB and mobi format
2016-10-20 16:16:17 -04:00
9954d5d346
forgot pair table change
2016-10-19 10:47:07 -06:00
b0cf1ded38
Merge pull request #229 from akohlmey/small-corrections
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collected various small corrections and updates
2016-10-19 08:57:54 -06:00
393337e7cf
Merge pull request #226 from akohlmey/pair-gauss-mixing
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add mixing support for pair styles gauss and gauss/cut
2016-10-19 08:37:32 -06:00
566effc9c9
account for new fix halt properly in PDF and online docs
2016-10-19 09:08:20 -04:00
7b7cb297e6
add mixing for pair styles gauss and gauss/cut contributed by andrew jewett. also add support for write_data.
2016-10-18 22:26:47 -04:00
5a6dea7a22
Merge branch 'master' into user-nc-dump
2016-10-18 15:36:18 -04:00
2106dce2b3
new fix halt command, other sundry small bug fixes
2016-10-18 13:11:40 -06:00
e4ff8128f1
fix typo
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(cherry picked from commit c65fb0e311
2016-10-16 12:29:53 -04:00
2c8a7a318a
bug fix for fix GCMC w/ fix shake, enhance of fix wall/gran/region with restarting
2016-10-13 16:55:53 -06:00
63e71cd45b
patch to add DPD-VV
2016-10-12 07:35:47 -06:00
39a22039e9
correct broken link
2016-10-11 23:57:40 -04:00
e10ea91c5f
add doc file to toctree
2016-10-11 23:51:42 -04:00
b75860048b
updates for recent changes to the manual
2016-10-11 23:50:45 -04:00
69cb831705
import dump nc and dump nc/mpiio from lammps-netcdf as USER-NC-DUMP package by lars pastewka
2016-10-11 23:44:34 -04:00
0eb7fbf34d
tweaks to new USER-DPD docs
2016-10-11 15:43:59 -06:00
6f1162927a
Merge pull request #207 from timattox/USER-DPD_new_VV_for_DPD
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USER-DPD: add support for using VV with DPD
2016-10-11 13:39:25 -06:00
04f5eadcf1
added LAST option to dump_modify thresh, more restart info printed out to screen
2016-10-11 12:39:52 -06:00
e70d530c46
Merge pull request #203 from rbberger/txt2rst-external-link-fix
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txt2rst external link fix
2016-10-10 13:59:27 -06:00
144e6a8091
whitespace cleanup
2016-10-10 09:40:09 -04:00
72ac073412
edited documentation
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(cherry picked from commit eff14c74b0
2016-10-10 09:38:54 -04:00
49c45ab03b
edited documentation
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(cherry picked from commit fd560889c3
2016-10-10 09:38:53 -04:00
c2cd439944
first draft of documentation for respa
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(cherry picked from commit d7dcbcfbd9
2016-10-10 09:38:53 -04:00
e27ed6c94a
USER-DPD: Added support to use VV integrator with USER-DPD if desired.
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Includes documentation and examples.
NOTE: VV requires very small timesteps under isoenergetic conditions.
Consider using fix_shardlow instead, since this VV support is
primarily for comparison purposes.
2016-10-07 15:03:30 -04:00
7f3a7c5cbe
Fix broken link
2016-10-06 20:33:24 -04:00
