Commit Graph

793 Commits

Author SHA1 Message Date
7fed6c7e4c Merge pull request #634 from craabreu/master
Computation of forces/torques on rigid bodies moved to post_force
2018-05-07 14:39:10 -06:00
d203118286 update rigid body reference outputs. add bodyforces early examples 2018-05-07 14:19:50 -04:00
a7c9418629 Merge pull request #890 from jrgissing/bond_react_final_touches
bond/react final touches
2018-05-07 10:37:47 -06:00
9d9d7cb9ed update example log files 2018-05-06 11:10:40 -04:00
916ed71760 fix bond/react final touches 2018-05-06 00:34:03 -06:00
f9f8e2bdbe update USER-BOCS example to match LAMMPS style and include reference logs 2018-05-05 11:43:05 -04:00
735bceb468 Merge branch 'master' into USER-BOCS 2018-05-05 10:21:21 -04:00
81293b0fda changes to integrate USER-BOCS into LAMMPS and to closer follow the LAMMPS programming/documentation style 2018-05-05 10:21:11 -04:00
c9d41178d8 update logfiles and adjust some example inputs to be consistent 2018-05-03 23:37:01 -04:00
eeee2d3026 Merge pull request #803 from jrgissing/fix_bond_react
Fix bond react
2018-05-03 14:16:46 -06:00
53cc609c4c make filenames comply with LAMMPS conventions and add reference log files 2018-05-03 16:03:37 -04:00
b5b70b429f update log files for SNAP package examples to reflect current state of keywords. 2018-05-03 13:00:24 -04:00
ed3f8d4b3f Update methanol.lmp 2018-05-02 11:28:44 -04:00
c5e884fb41 USER-BOCS 2018-04-26 09:34:47 -04:00
4fa95de91c update logfiles for gcmc example inputs 2018-04-04 12:33:48 -04:00
24e0ca5377 avoid warning about group all 2018-04-04 12:28:20 -04:00
d1356c1d76 Made ndof dynamic for temperature fixes and computes 2018-04-03 15:07:04 -06:00
5a341bee09 minor cleanup in docs and updated log files for kolmogorov/crespi/full 2018-03-23 06:42:04 -04:00
c398eb6b57 update kolmogorov-crespi examples 2018-03-22 19:42:07 -04:00
8de7c449fc refactor code and examples to match LAMMPS conventions. whitespace cleanup. shorten examples. 2018-03-22 19:31:41 -04:00
6415befb5b Add more examples 2018-03-14 16:30:54 +02:00
bbb2a6d641 Finally updated the github tutorial 2018-03-13 17:43:25 +02:00
fcfbdb13ab provide new reference outputs for various reaxff examples 2018-03-08 18:10:28 -05:00
52446eed6d make fix bond/react example inputs more similar to other input examples in LAMMPS 2018-03-03 19:34:31 -05:00
3b90f60064 Merge pull request #3 from lammps/master
rebase
2018-02-24 23:49:27 -07:00
7d1de34533 gatherv fix, doc updates 2018-02-24 22:49:28 -07:00
3787b89447 re-add compressed data file (was hidden by .gitignore) 2018-02-22 02:31:25 -05:00
aa1503b7e0 Merge pull request #800 from athomps/fix_gcmc_segfault_fix
Added warning to discourage use of group all and fixed some segfault …
2018-02-21 09:50:22 -07:00
daae906162 move fix bond/react examples and compress large data file 2018-02-21 10:30:35 +01:00
c399b75dec 2nd try on LATTE error returns, plus a couple minor doc edits 2018-02-20 12:52:12 -07:00
a04a975d3a add large nylon example for parallel validation, reformat doc page 2018-02-11 17:35:47 -07:00
a6eb521468 strip off unwanted ^M characters 2018-02-09 17:32:32 +01:00
996c62f4e0 fix bond/react: generalized classical chemical reactions 2018-02-07 21:58:05 -07:00
1d403b2aa3 Added warning to discourage use of group all and fixed some segfault cases 2018-02-05 13:29:14 -07:00
3e0cb9b463 rename examples to match usual naming conventions and add reference output. 2018-02-01 18:56:10 +01:00
f7e2bf239f Added MOF-FF src, doc and example files 2018-01-21 11:40:48 +01:00
bf48f3e240 Merge pull request #758 from mkanski/ci-ReaxFF
Modification of ReaxFF
2018-01-16 13:04:20 -07:00
21ff4407ab update of COUPLE/simple examples 2018-01-16 10:48:38 -07:00
b374813104 Add reax example 2018-01-16 08:50:30 -07:00
e26c170679 Added example and tabulated close-range correction 2018-01-09 15:08:08 +01:00
1bd9e175e9 Merge pull request #749 from akohlmey/collected-bugfixes-and-updates
Collected bugfixes and updates for the next patch release
2018-01-08 09:20:18 -07:00
46217db8a5 make python functions examples more complete by adding exception handling and initializing variables 2018-01-06 12:56:42 -05:00
2a131d1416 Merge remote-tracking branch 'upstream/master' into fix_python_move 2017-12-15 13:56:54 -05:00
bcc5f49d0b Rename fix python to fix python/invoke 2017-12-15 13:53:04 -05:00
950bfb84a9 Clean up after renaming back to fix python/move 2017-12-15 13:27:27 -05:00
4d725c3153 Revert "Rename fix python/move to move/python"
This reverts commit 4d915dba08.
2017-12-15 13:17:12 -05:00
73d509f339 Merge pull request #735 from jaapkroe/extep
Add ExTeP pair style
2017-12-07 08:22:34 -07:00
4d915dba08 Rename fix python/move to move/python 2017-12-05 23:42:57 -05:00
f8891a4451 Rename fix python/integrate to python/move
This is to avoid confusion to what LAMMPS considers to be an
integrator like Verlet and RESPA.
2017-12-02 01:04:46 -05:00
51688b2504 Improve performance of Python integrator (NVE_Opt version)
Removing the loop over atoms by using NumPy array indexing allows to recover
performance close to that of plain fix nve.
2017-12-02 00:40:21 -05:00