Commit Graph

30736 Commits

Author SHA1 Message Date
6475d4b956 Skip Fortran unittests if no Fortran MPI support is found 2022-05-18 07:16:16 -04:00
d54f97736e whitespace 2022-05-18 06:32:52 -04:00
1466620750 update googletest to the latest github commit 2022-05-18 06:09:42 -04:00
baa48946e5 add comment to please CodeQL 2022-05-18 00:56:10 -04:00
e7b9d03573 crank up epsilon for tip4p/cut styles some more 2022-05-18 00:28:42 -04:00
d8b37601a8 Merge pull request #3262 from akohlmey/collected-small-changes
Collected small changes and fixes
2022-05-18 00:11:05 -04:00
d94bcd043b enforce using a single thread with Kokkos and SNAP or PACE 2022-05-17 23:42:24 -04:00
15a727a7ff avoid segfaults with Kokkos threads 2022-05-17 23:41:46 -04:00
e94275391c Merge branch 'develop' into collected-small-changes 2022-05-17 22:10:15 -04:00
935c9a02d7 Merge pull request #3267 from athomps/born-rotated
Added Python wrapper that handles rotations to and from LAMMPS frame
2022-05-17 19:52:52 -04:00
55e0af930b Merge pull request #3269 from yury-lysogorskiy/master
Update ML-PACE installation to v.2021.10.25.fix version
2022-05-17 19:50:49 -04:00
a5171beacd make lammps-shell test compatible with MULTI-CONFIG CMake builders 2022-05-17 18:26:27 -04:00
72209b0617 Merge pull request #3258 from akohlmey/create-atoms-mesh
Create atoms from STL mesh
2022-05-17 18:11:41 -04:00
899764c00c Merge pull request #3268 from akohlmey/update-kappa-example
Update KAPPA example
2022-05-17 17:18:45 -04:00
cebbd471cf tweak unit test epsilon for portability to MacOS /w ARM 2022-05-17 17:15:42 -04:00
8ffe2a206c Update ML-PACE installation to v.2021.10.25.fix version 2022-05-17 22:41:43 +02:00
f9efa426a7 Merge pull request #3256 from lammps/delete-atoms-exact
Delete atoms exactly by fraction or count
2022-05-17 16:25:21 -04:00
ae979aca4e consistently use prefactor instead of pre-factor (the former was more common) 2022-05-17 16:20:10 -04:00
38d7fcee92 correct and update create_atoms mesh documentation 2022-05-17 16:16:32 -04:00
e7d072c593 add sanity check on radscale value, set radius also for quasi-random mode 2022-05-17 16:15:46 -04:00
d487ab10e2 doc page and unittest tweaks 2022-05-17 12:00:40 -06:00
853e3ae99b fix typo and clarify error message 2022-05-17 13:52:29 -04:00
dbb3e75f24 change partial to random 2022-05-17 11:02:42 -06:00
fe4782696e silence compiler warnings 2022-05-17 06:03:01 -04:00
326b833d7f (temporarily) disable Kokkos deprecation warnings in CMake presets in preparation for stable release 2022-05-17 06:02:50 -04:00
bf98df3264 silence compiler warnings 2022-05-16 23:20:04 -04:00
df40732343 Make cast to double explicit 2022-05-16 15:00:13 -04:00
d32885fbe3 Fix compiler warnings 2022-05-16 14:48:02 -04:00
659fd82a9e Fix compiler warnings 2022-05-16 14:35:24 -04:00
db2d5b863d Improved MPI portability and added reference log files 2022-05-16 08:22:45 -06:00
ee8a8b6cd0 Added Python wrapper that handles rotations to and from LAMMPS frame 2022-05-15 17:43:18 -06:00
b1ba616470 update KAPPA example for current code, to use thermo_modify colname, and compute kappa in input 2022-05-15 18:58:50 -04:00
44f3ad5620 update singularity image descriptions for newer versions of cuda and rocm 2022-05-15 08:11:50 -04:00
c0e5a03989 update tests for delete_atoms 2022-05-15 01:56:59 -04:00
f62363516c streamline the refactored interface for delete_atoms partial some more 2022-05-15 01:56:45 -04:00
8e6b0425f7 apply clang-format 2022-05-14 18:01:34 -04:00
a79814793e improve handling of hybrid styles and their arguments and errors 2022-05-14 17:56:44 -04:00
1f30d3f140 programming style 2022-05-14 17:56:12 -04:00
1b552de1cd make default settings() functions for bonded interactions error out with arguments 2022-05-14 17:55:56 -04:00
42a4fba390 implement better checking for atom_style arguments and remove redundant code 2022-05-14 15:43:11 -04:00
173e80a970 Merge pull request #71 from jtclemm/create-atoms-mesh
Fixing typos and cleaning up quasirandom comments
2022-05-14 15:13:27 -04:00
55fef9a482 Fixing typos and cleaning up quasirandom comments 2022-05-14 11:39:20 -06:00
9a9bb749fa Merge remote-tracking branch 'github/develop' into collected-small-changes 2022-05-14 10:39:18 -04:00
223aebe3fb Merge pull request #3251 from stanmoore1/kk_update_3.6.0
Update Kokkos library in LAMMPS to v3.6.0
2022-05-14 10:38:41 -04:00
168d3bdd3c Correctly handle the case that the YAML python module is not installed 2022-05-14 10:15:40 -04:00
9661711a1e avoid out-of-bounds access in dump style cfg, update docs with simpler semantic 2022-05-14 09:39:50 -04:00
d4ea5ca49e more clang-tidy fixes after re-running it with added settings 2022-05-14 07:18:05 -04:00
2f0baa86d6 configure desired clang-tidy settings explicitly, must unset variable to turn off 2022-05-14 07:13:25 -04:00
b8a4ddc42a Merge pull request #3264 from stanmoore1/kk_pace_release
Add Kokkos version of ML-PACE
2022-05-13 23:36:05 -04:00
90797d53d9 one more batch of clang-tidy fixes 2022-05-13 23:21:14 -04:00