Commit Graph

217 Commits

Author SHA1 Message Date
8ab2544f5b Add option to specify # of numa domains for processors grid numa style, simplify numa mapping with more agressive optimization to reduce comm between numa domains. 2024-03-07 07:07:16 -08:00
12422ff510 replace defines with static constexpr declarations 2024-01-21 15:53:35 -05:00
6edcd995af Merge branch 'develop' into fix-kokkos-4 2022-12-21 12:31:50 -05:00
3137122476 remove kokkos numa option and its documentation 2022-12-21 12:31:32 -05:00
b4118c51cc merged in current master 2022-11-04 08:22:18 -06:00
7346aee4ad logic for all callers to use new Grid3d/Grid2d 2022-11-02 11:46:26 -06:00
b6e29fd5d7 debugging of grid remap 2022-10-27 16:40:53 -06:00
7bf4c8d54a more debugging 2022-10-26 15:14:06 -06:00
2132b1d904 update developer reference text 2022-10-24 11:08:26 -04:00
cccf3f6f78 change email for contacting LAMMPS developers, add to homepage checker 2022-10-20 20:36:03 -04:00
3e21738698 finish merge of develop 2022-08-29 17:07:49 -06:00
b9bab9d5e3 fix logic error introduced in PR #3408 2022-08-27 10:23:58 -04:00
3ec06dd2c2 improve some error messages in comm, domain and region.cpp 2022-08-19 21:06:00 +08:00
ccf6c2d55a Merge remote-tracking branch 'github/develop' into distributed-grids 2022-08-18 15:18:27 -04:00
91b98484ad modernize and simplify 2022-08-11 03:45:36 -04:00
dff206f297 more work on grid classes 2022-07-25 13:56:28 -06:00
36723853c9 Merge branch 'develop' into BPM 2022-04-11 12:18:34 -04:00
39b316729b use auto type when assigning from cast or using new 2022-04-10 18:16:36 -04:00
1a04eabb5e merge in current develop 2022-03-11 10:01:25 -07:00
f5626a2b9d Few more merge conflicts 2021-11-02 12:29:49 -06:00
d7f7835069 Fix merge conflicts, minor style fixes 2021-11-01 18:13:06 -06:00
8bf016eaef use references when looping over fixes from list 2021-10-25 21:41:57 -04:00
d0416757b7 simplify using new APIs 2021-10-24 18:00:15 -04:00
41a3eccd1c apply utils::logical() to more commands 2021-09-21 07:48:50 -04:00
898f8086db consolidate binary() member functions of Comm and Balance into utils::binary_search() 2021-09-06 16:58:14 -04:00
75cb6fc51b added support for LAMMPS as MDI AIMD driver 2021-09-02 17:52:10 -06:00
d2984d2615 Merge branch 'master' into BPM 2021-08-27 10:04:04 -06:00
bb720626e3 Adding files for BPM 2021-08-27 09:22:56 -06:00
d4de26f6ef fix whitespace issues 2021-08-19 17:28:48 -04:00
2119b59d97 code documentation tweaks 2021-08-18 15:49:23 -06:00
1c5bdadcfb small alteration to code that assigns grid pts to procs 2021-08-18 15:43:54 -06:00
09c19a936b update URLs in source code and manual 2021-05-24 14:18:20 -04:00
aa6c6169a8 Merge branch 'master' into prepare-clang-format
# Conflicts:
#	src/KOKKOS/nbin_kokkos.h
#	src/KOKKOS/nbin_ssa_kokkos.h
#	src/MOLECULE/bond_fene_expand.h
#	src/USER-DPD/nbin_ssa.h
#	src/USER-DPD/nstencil_half_bin_2d_ssa.h
#	src/USER-DPD/nstencil_half_bin_3d_ssa.h
#	src/USER-INTEL/nbin_intel.h
#	src/USER-MISC/fix_propel_self.cpp
#	src/USER-OMP/npair_full_multi_old_omp.h
#	src/USER-OMP/npair_half_multi_old_newton_omp.h
#	src/USER-OMP/npair_half_size_multi_newtoff_omp.h
#	src/USER-OMP/npair_halffull_newtoff_omp.h
#	src/USER-OMP/npair_halffull_newton_omp.h
#	src/USER-OMP/npair_skip_omp.h
#	src/main.cpp
#	src/nbin_standard.h
#	src/npair_full_multi_old.h
#	src/npair_halffull_newtoff.h
#	src/npair_halffull_newton.h
#	src/npair_skip.h
#	src/npair_skip_respa.h
#	src/npair_skip_size.h
#	src/npair_skip_size_off2on.h
#	src/npair_skip_size_off2on_oneside.h
#	src/nstencil_full_bin_2d.h
#	src/nstencil_full_bin_3d.h
#	src/nstencil_full_ghost_bin_2d.h
#	src/nstencil_full_ghost_bin_3d.h
#	src/nstencil_full_multi_2d.h
#	src/nstencil_full_multi_3d.h
#	src/nstencil_full_multi_old_2d.h
#	src/nstencil_full_multi_old_3d.h
#	src/nstencil_half_bin_2d_newtoff.cpp
#	src/nstencil_half_bin_3d_newtoff.cpp
#	src/nstencil_half_bin_3d_newton_tri.h
#	src/nstencil_half_ghost_bin_2d_newtoff.cpp
#	src/nstencil_half_ghost_bin_2d_newtoff.h
#	src/nstencil_half_ghost_bin_3d_newtoff.cpp
#	src/nstencil_half_ghost_bin_3d_newtoff.h
#	src/nstencil_half_multi_2d.h
#	src/nstencil_half_multi_2d_newtoff.h
#	src/nstencil_half_multi_2d_newton_tri.h
#	src/nstencil_half_multi_2d_tri.h
#	src/nstencil_half_multi_3d_newtoff.h
#	src/nstencil_half_multi_3d_newton_tri.h
2021-05-14 15:24:02 -04:00
cac634076d ensuring cutusermulti always created 2021-05-12 08:59:12 -06:00
7f94712839 Explicitly defining default ncollections 2021-05-12 08:17:14 -06:00
6b45f9052f small fixed and error checking 2021-05-12 08:55:00 -04:00
9ef0395313 whitespace fixes 2021-05-12 06:30:52 -04:00
f0e52981f2 Merge branch 'master' into multi_epcc 2021-05-12 06:16:52 -04:00
d8291eea7b Merge branch 'master' into prepare-clang-format
# Conflicts:
#	src/MOLECULE/bond_fene.h
#	src/MOLECULE/bond_fene_expand.h
2021-05-11 21:49:48 -04:00
d1941392d3 disable clang-format for all existing .cpp files (for now) 2021-05-05 23:53:38 -04:00
22e93468d6 simplify code by appling varargs messages and warnings 2021-05-05 18:19:12 -04:00
f12f9166a5 Resolving merge conflicts, updating URLs 2021-05-05 11:19:44 -06:00
fa386c0e96 Changing how multi/cutoff works, changing collection indexing in user args 2021-05-04 17:12:17 -06:00
6b04ebd617 Merge branch 'master' into varargs-log-error-functions 2021-04-26 13:27:58 -04:00
7e7a448a08 remove the old versions of the utility function and use the new 2021-04-24 21:33:36 -04:00
d2cdb318ab apply new logmesg() overload to a bunch of cases. 2021-04-21 23:38:45 -04:00
bd6dd658d6 Updating to master, misc style changes 2021-04-07 17:21:16 -06:00
d54384dd91 Merge branch 'master' into multi_epcc 2021-04-07 16:34:01 -06:00
ece2433208 use utils::strdup() for duplicating strings 2021-03-15 17:55:19 -04:00
58e4938b0f Updating examples, updating multi in info, fixing memory issues in comm/neighbor 2021-02-08 10:50:57 -07:00