Commit Graph

11621 Commits

Author SHA1 Message Date
68e2c0bca8 Correct next_line in PotentialFileReader 2020-05-27 13:03:17 -04:00
6d339c8b03 Add unit tests for PotentialFileReader 2020-05-27 13:02:39 -04:00
caa43c7ed6 Merge remote-tracking branch 'akohlmey/more-pair-style-tests' into tokenizer 2020-05-27 12:59:32 -04:00
7c9ad91d8f fix bug in pair style tersoff/zbl/omp 2020-05-27 10:53:29 -04:00
3415ccd60d Merge branch 'more-pair-style-tests' into tokenizer 2020-05-27 09:37:22 -04:00
2e3f03f9ca remove pair style eam/cd/omp which seems broken beyond repair 2020-05-26 20:55:57 -04:00
e01e72cc8e Formatting 2020-05-26 20:29:09 -04:00
5e4ce8d03c Use Error::one in PotentialFileReader 2020-05-26 20:27:16 -04:00
13942a4d20 Use PotentialFileReader in PairComb 2020-05-26 20:23:28 -04:00
c302c0bca2 Add PotentialFileReader and use it in PairSW 2020-05-26 20:10:48 -04:00
ff3ebd4f6a fix two memory allocation/deallocation bugs in pair style comb3 2020-05-26 19:56:28 -04:00
74249380ec Add count method to ValueTokenizer 2020-05-26 16:30:46 -04:00
799b676f89 must skip corresponding per-atom data accumulation if compute_flag for pair or kspace is 0 2020-05-21 11:05:16 -04:00
4eca3c46a6 fix bug that messes up r-RESPA from some strange reason. 2020-05-21 01:13:48 -04:00
3d567c14ef Revert changes to be more C-like for Steve 2020-05-20 18:00:01 -04:00
7ac0f869ef Add ValueTokenizer 2020-05-20 15:53:50 -04:00
46239e4577 Add utils::is_double and utils::is_integer 2020-05-20 15:53:41 -04:00
9e3759d0fc Add missing newlines 2020-05-20 15:53:29 -04:00
4a2d3e95cb Replace Atom::count_words with utils::count_words 2020-05-20 15:53:19 -04:00
db46521d64 Add utils::count_words and utils::trim_comment 2020-05-20 15:53:08 -04:00
807130c771 Replace AtomVec::tokenize and use Tokenizer 2020-05-20 15:50:10 -04:00
d41927b056 Add Tokenizer class 2020-05-20 15:49:02 -04:00
5281dea651 Merge pull request #2095 from stanmoore1/kk_snap_beta
Fix redundant computation in Kokkos Pair SNAP on GPUs
2020-05-20 15:30:17 -04:00
58ca1dcf8e Merge pull request #2094 from akohlmey/collected-small-changes
Collected small changes and bug fixes for the next patch release
2020-05-20 14:33:34 -04:00
c50bd25d42 Merge pull request #2093 from junghans/lammps_cleanup
remove fftw_cleanup() from main()
2020-05-20 14:26:41 -04:00
ffaa77af6b reintroduce bugfix for bessel function distributed random numbers 2020-05-19 09:02:17 -04:00
4ac7a26fe1 add support for extracting r0 array to bond style zero 2020-05-18 19:37:54 -04:00
6b1dbe2393 the first argument to Bond::extract() should be const char * not char *. 2020-05-18 18:15:10 -04:00
8395ec9e43 avoid segfault with eam/intel when using it with a hybrid pair style 2020-05-18 14:31:57 -04:00
c67ca88b04 Fix redundant computation in SNAP on GPUs 2020-05-18 08:42:30 -07:00
9ed2824de8 add missing coulomb tabulation to pair style lj/class2/coul/long 2020-05-15 22:14:08 -04:00
dc74fac4d3 silence compiler warning 2020-05-15 20:04:49 -04:00
fa7319e626 drop fftw_cleanup() completely 2020-05-15 16:57:44 -06:00
b1ee9ad1fe Merge pull request #2091 from stanmoore1/kk_summit
Rename Kokkos Makefile
2020-05-15 17:39:53 -04:00
58b304be62 move fftw_cleanup() into LAMMPS::cleanup() 2020-05-15 13:30:55 -06:00
f1a9eab5da initialze omega and angmom when read data file 2020-05-15 13:07:34 -06:00
1d52e7f243 Rename Kokkos Makefile 2020-05-15 12:19:16 -06:00
37442ca5cf fix bug in USER-OMP with "pair_modify compute no" and "kspace_modify compute no" 2020-05-15 08:06:23 -04:00
87c34fb144 dihedral base class did not initialize suffix_flag member. 2020-05-14 20:48:21 -04:00
20ad924a54 Merge pull request #2082 from stanmoore1/kk_bigint
Fix 32-bit integer overflow in Kokkos neighlist build on GPUs
2020-05-11 20:55:14 -04:00
3d0186987d simplify 2020-05-11 18:31:07 -04:00
b1ac51f721 Fix 32-bit integer overflow in Kokkos neighlist build 2020-05-11 15:11:24 -06:00
23c55b0046 fix "use of class after delete" bug 2020-05-11 16:23:04 -04:00
0ab3ebbac0 improve readability 2020-05-11 13:31:47 -04:00
822c7c5ca1 elimitate nthreads member, change threads from int to bool and determine number of threads dynamically
this fixes #2081
2020-05-11 10:57:27 -04:00
6e53608789 a new communicator should have a different number than the old 2020-05-10 14:08:54 -04:00
4ee5eee7cb don't use C++ style comments in C code 2020-05-10 14:08:06 -04:00
afd769314b define _noopt macro with -D_FORTIFY_SOURCE to be empty to avoid false positives 2020-05-10 14:06:56 -04:00
987bff27d4 fix issues in AtomVec refactoring detected by compiler warnings 2020-05-10 14:05:32 -04:00
06737ce7a7 Merge pull request #1788 from lammps/atomvec-custom
Refactoring of AtomVec class
2020-05-08 15:18:11 -04:00