Commit Graph

9286 Commits

Author SHA1 Message Date
6a2023e7df spelling 2022-10-03 09:55:20 -04:00
d711a51657 Merge remote-tracking branch 'github/develop' into fortran-further-tinkering 2022-10-03 09:37:52 -04:00
dc5324c1db Updated unit tests to use keepstuff; whitespace fixes 2022-10-02 21:26:42 -05:00
db9b59c269 Implemented scatter_atoms and scatter_atoms_subset + unit tests + documentation + typos/edits 2022-10-02 20:32:42 -05:00
c5c21bb36c Implemented, tested, and documented gather_atoms and variants; added RST docs for lammps_scatter_atoms and lammps_gather_atoms and variants (library.cpp); checked for missing atom map in lammps_gather_atoms_subset; fixed bug in keepstuff.f90; fixed docs for extract_variable 2022-10-02 15:28:10 -05:00
c777434b72 use kcal consistently 2022-10-01 21:05:16 -04:00
39ea6ef30e make \AA macro available in :math: for HTML and PDF
use the (newly redefined) \AA macro for Angstrom symbol throughout
instead of either \mathring{A} or AA
2022-10-01 20:58:48 -04:00
69ca7105ef provide some more details about typesetting special characters and math 2022-10-01 20:41:48 -04:00
9c314966ae More spacing 2022-09-30 19:58:56 -05:00
eac855343f Spacing 2022-09-30 19:54:58 -05:00
6dea4d50d6 Fixed oversight in edits to example in Fortran doc page 2022-09-30 19:51:56 -05:00
a323e09822 Merge branch 'lammps:develop' into fortran-further-tinkering 2022-09-30 19:40:32 -05:00
bbc08bbf1f make capitalization consistent 2022-09-30 19:53:11 -04:00
953c3d0cad spell check; updated false positives; whitespace 2022-09-30 18:50:16 -05:00
c61b356a71 clarify LJ energy function component of the quartic bond style 2022-09-30 19:48:56 -04:00
b48868d70b better document format style variable behavior 2022-09-30 15:05:56 -04:00
fce0877cac update and remove obsolete parts 2022-09-30 09:49:57 -04:00
a7071fea78 Wrote docs for extract_fix,extract_variable; fixed python so it knows about string variables; doc typo fixes; part of extract_variable unit test 2022-09-29 19:28:15 -05:00
09948f11be make equation references explicit since .. math:: + 🏷️ does not work with latex 2022-09-29 13:54:09 -04:00
c6eb6d858b implement numbered equations and equation references 2022-09-29 12:04:43 -04:00
96c0d39be2 Merge branch 'develop' into pdlammps-howto 2022-09-29 10:42:34 -04:00
3ab8f6ea16 Finished docs for everything currently implemented 2022-09-29 09:14:49 -05:00
8e073c3335 reference the Howto from the rest of the manual. Spelling fixes. 2022-09-29 07:43:01 -04:00
777a074744 Convert PDLAMMPS user doc from latex to sphinx 2022-09-29 06:57:52 -04:00
6c0da8cbaf Wrote documentation for extract_fix, extract_variable 2022-09-29 01:07:46 -05:00
6109090d40 Merge branch 'lammps:develop' into fortran-further-tinkering 2022-09-27 20:02:06 -05:00
0fe739eb35 Merge branch 'develop' into collected-small-changes
# Conflicts:
#	doc/utils/sphinx-config/false_positives.txt
2022-09-26 20:34:37 -04:00
be98b5a168 Merge pull request #3458 from Boogie3D/mliappy_unified
MLIAP Unified Interface
2022-09-26 20:33:17 -04:00
10068a0fde Merge pull request #3461 from julient31/llg-correction
Correction of some LL features in the SPIN package
2022-09-26 14:56:36 -04:00
5ea37448b6 whitespace 2022-09-26 13:12:04 -04:00
a4e92ed4a9 update broken URLs 2022-09-26 12:09:45 -04:00
543e7b8b56 format DOI tags consistently 2022-09-26 11:41:22 -04:00
30ddb2d4b4 Merge branch 'clean-master2' of github.com:julient31/lammps into llg-correction 2022-09-26 07:53:09 +02:00
90f26f05fc Correcting some aspects of the SPIN package documentation. 2022-09-26 07:43:19 +02:00
bada1fb348 Finished extract_compute and its unit tests and documentation 2022-09-25 23:54:18 -05:00
af3da50bda add some more versionadded tags, now mostly complete for 2022 2022-09-25 09:41:55 -04:00
3a95a7b973 add utility to detect pending version tags in .. versionadded/changed:: 2022-09-25 03:51:54 -04:00
64b88f2e13 add versionadded/versionchanged markers for features from 15Sep2022 and 3Aug2022 2022-09-25 03:20:29 -04:00
ef8090fdd1 flag *unified* keyword as newly added in the next patch release 2022-09-24 15:31:47 -04:00
058e49696a Added "New in version TBD" to new functions 2022-09-24 12:12:24 -05:00
26e269aacd continued ork on extract_compute unit tests 2022-09-24 12:04:27 -05:00
b37c145352 convert URLs to https where possible, check URLs for bit rot and update or remove 2022-09-24 08:02:18 -04:00
a0caf34d71 update sjplimp's email and homepage 2022-09-24 05:02:53 -04:00
caa80ef344 use upper case LAMMPS as the name of the package consistently 2022-09-24 03:45:23 -04:00
5ddb0aeb16 cosmetic changes 2022-09-24 03:44:19 -04:00
c581fca39a Merge branch 'develop' into mliappy_unified 2022-09-24 03:07:31 -04:00
49a3be17cb c-library functions should be always present, documented, and lowercase 2022-09-24 03:07:24 -04:00
69627eee8d Merged with fortran-tinkering 2022-09-23 22:11:24 -05:00
8ad478697e Remove trailing whitespace 2022-09-23 17:20:27 -06:00
86d1aacf7e add function to dispatch LAMMPS errors to library interfaces 2022-09-23 16:28:15 -04:00