Commit Graph

143 Commits

Author SHA1 Message Date
6a745f40ea make bugfix compatible with using a variable for dump_modify every 2022-08-31 17:19:44 -04:00
673eeff581 recover dump_modify every behavior 2022-08-31 14:39:46 -04:00
3292ee8299 Fixed the last change to modify_params function 2022-08-14 10:21:49 +08:00
d599a541b5 improved some error messages in velocity.cpp and dump.cpp 2022-08-13 19:10:57 +08:00
a9c072488a fix cut-n-paste error and improve error message 2022-07-17 11:42:28 -04:00
ff56f75fca abort when there was an error writing to the dump file 2022-06-30 15:57:47 -04:00
b46773e398 add support for writing a dump file footer 2022-06-17 15:53:04 -04:00
eb3ee96b9c also apply 2 atom minimum to balance() and packing atom IDs 2022-05-18 14:22:43 -04:00
bfd6efcedb no need to sort dump if there are less than 2 atoms 2022-05-18 13:48:06 -04:00
35dd5bc978 fix typo 2022-05-13 03:00:31 -04:00
58093fec99 accept .lammpsbin in addition to .bin for binary format output 2022-05-12 15:26:39 -04:00
2b1716cb3a fix more bugs with dump_modify every/time 2022-05-05 00:06:08 -04:00
36723853c9 Merge branch 'develop' into BPM 2022-04-11 12:18:34 -04:00
39b316729b use auto type when assigning from cast or using new 2022-04-10 18:16:36 -04:00
ce67cb0ca1 first stab at implementing dump_modify colname 2022-04-01 07:41:13 -04:00
27d2fab951 simplify processing for "*" in filenames for embedding timestep by using utility function 2022-03-29 06:06:48 -04:00
642b1e25f6 Updating to develop 2022-02-18 13:58:38 -07:00
f45663bfc2 Simplify loop structure to fix issues 2022-02-04 11:45:28 -08:00
e15ca1eeef Fix bug in dump balance 2022-02-01 10:23:25 -08:00
f6d0be1257 avoid integer overflow due to precedence 2022-01-28 17:08:16 -05:00
96502ae49d whitespace 2022-01-28 17:07:03 -05:00
75a00f4d11 minor cleanup 2022-01-25 08:52:53 -07:00
64dbce26dc Cannot shrink buf 2022-01-25 08:45:13 -07:00
67af170929 Sorting is not required for balancing 2022-01-24 16:22:55 -07:00
cb9ba8c0a3 Simplify code 2022-01-24 16:05:27 -07:00
1d60e4c463 Add docs 2022-01-24 15:16:49 -07:00
16810b84eb Add option to balance dump file output 2022-01-24 14:35:27 -07:00
19abc5d329 Merge branch 'develop' into BPM 2022-01-12 10:52:11 -07:00
b39d1993bb Merge pull request #3052 from lammps/time-dumps2
Time-dependent dumps for variable timestep (alternate implementation)
2021-12-23 16:34:12 -05:00
6af36075ba Merge pull request #3064 from rbberger/collected-small-changes
Collected small changes and fixes
2021-12-23 16:13:35 -05:00
23f1c9de60 Merge branch 'develop' into time-dumps2 2021-12-23 14:29:04 -05:00
3748a14582 warn about problems with the MPIIO package 2021-12-23 01:59:45 -05:00
6a442e1df4 use compute_time() func in xyz output 2021-12-21 14:05:16 -07:00
4d31e300c6 change to checking timestep for time dumps at start of each step 2021-12-20 16:39:17 -07:00
744e615dbb Revamping public methods for history, adding support for bond react 2021-12-13 17:35:53 -07:00
5ead32f886 more debugging and features 2021-12-10 11:13:06 -07:00
d4149e9139 bug fixes to make a series of test inputs run correctly 2021-12-08 16:44:51 -07:00
26492b13d5 logic for dumps every steps and time delta 2021-12-07 13:46:36 -07:00
1afdd3c011 new output vars for dumps 2021-12-07 09:16:19 -07:00
15f1c2d960 Fix inaccurate error message 2021-11-18 08:50:09 -07:00
94b11964f8 Write dump header after sort to fix incorrect atom count for multiproc 2021-11-18 08:32:41 -07:00
5616336d5e Allow sorting with reorderflag for more than 2 billion atoms 2021-11-18 07:59:45 -07:00
136c15a8ba Allow dump sort to work with more than 2 billion atoms 2021-11-04 19:59:48 -06:00
5b40e4cb38 new accessor APIs for fixes and computes in Modify plus a few applications 2021-10-16 06:00:28 -04:00
6a9bb577cf rename "zip" functions to "compress" functions. update related docs 2021-10-07 12:38:11 -04:00
6c7b42a190 small tweaks and fixes for compiling with MSVC++ 2021-10-06 15:24:59 -04:00
ec1a55b35b use platform code for reading/writing of compressed text file via a pipe 2021-10-06 15:04:48 -04:00
41a3eccd1c apply utils::logical() to more commands 2021-09-21 07:48:50 -04:00
6fea5dd316 avoid creating empty per atom position arrays for enforcing pbc for dumps 2021-08-26 16:16:30 -04:00
80f28e7fa9 fixing merge conflicts, update to master 2021-06-02 12:33:37 -06:00