Commit Graph

158 Commits

Author SHA1 Message Date
dd6f584476 removed debug lines 2023-01-04 11:53:43 +01:00
4a96ce6ccc whitespace 2023-01-03 21:33:27 -05:00
d47acfc0c4 Have PyTorch interface for MLIAP working in Kokkos. This uses cuPy and a simple example is provided 2022-12-28 07:01:47 +01:00
78910eb0e1 add comment that this file needs to be updated when APIs are added 2022-10-28 21:13:50 -04:00
248b7383c7 Merge remote-tracking branch 'github/develop' into collected-small-changes
# Conflicts:
#	src/DIPOLE/pair_lj_cut_dipole_long.h
#	src/OPENMP/fix_nvt_sllod_omp.h
#	src/PHONON/fix_phonon.h
#	src/SPIN/pair_spin_dipole_cut.h
#	src/SPIN/pair_spin_dipole_long.h
#	src/STUBS/mpi.h
#	src/UEF/fix_nh_uef.h
#	src/fix_nvt_sllod.h
#	tools/coding_standard/homepage.py
2022-10-24 15:50:50 -04:00
3c4b0a0c04 expand homepage checker tool to check a few more folders and apply updates 2022-10-24 10:58:39 -04:00
1d69e93330 make Linux behavior default for loading Python shared lib
This adds portability to platforms like FreeBSD
2022-10-21 15:32:55 -04:00
24379d009c flag lammps.has_package() python method as new 2022-10-14 04:48:08 -04:00
0a8dfb73da make lammps_config_has_package() accessible in Python module 2022-10-14 04:46:32 -04:00
ea512ce2bb update comments about which files to keep synchronized for consistency 2022-10-03 09:22:28 -04:00
da2f7f6fad Forgot to put LMP_VAR_VECTOR in the documentation 2022-09-30 20:14:40 -05:00
9183c0e1c8 Removed commented-out line now that I know it works 2022-09-30 20:02:23 -05:00
a323e09822 Merge branch 'lammps:develop' into fortran-further-tinkering 2022-09-30 19:40:32 -05:00
756d24ff9e Implemented vector-style variables in C, Python, and Fortran APIs; unit test and more for Fortran/extract_variable 2022-09-30 16:02:26 -05:00
a7071fea78 Wrote docs for extract_fix,extract_variable; fixed python so it knows about string variables; doc typo fixes; part of extract_variable unit test 2022-09-29 19:28:15 -05:00
1d4297e2dd Implemented extract_fix, extract_variable, flush_buffers; unit test for extract_fix 2022-09-28 22:09:26 -05:00
3e9dca3017 Implement alternate and recommended way to set properties of abstract base class
See: https://github.com/lammps/lammps/security/code-scanning/476
2022-09-26 21:01:22 -04:00
be98b5a168 Merge pull request #3458 from Boogie3D/mliappy_unified
MLIAP Unified Interface
2022-09-26 20:33:17 -04:00
59ca352e48 whitespace 2022-09-24 15:34:41 -04:00
49a3be17cb c-library functions should be always present, documented, and lowercase 2022-09-24 03:07:24 -04:00
5aad045686 Improve incompatible python interpreter warning 2022-09-23 16:51:20 -06:00
86d1aacf7e add function to dispatch LAMMPS errors to library interfaces 2022-09-23 16:28:15 -04:00
3d7a31a59f Merge branch 'lammps:develop' into mliappy_unified 2022-09-09 14:03:43 -06:00
e563eb41c1 Remove unnecessary comments 2022-09-06 09:08:42 -06:00
341f5cf40d Ensure all subnets are proper dtype 2022-09-06 08:40:43 -06:00
bd7a7d4f74 Working MD with 2 atom types 2022-09-06 08:21:01 -06:00
d5ae116a89 Rename mliap_unifiedpy.pyx to mliap_unified_couple.pyx, fix references 2022-09-01 02:57:48 -06:00
a17e3e2350 Add init parameters to Unified LJ example 2022-09-01 02:43:16 -06:00
0ba0a382c3 Merge branch 'mliappy_unified' of github.com:Boogie3D/lammps into mliappy_unified 2022-08-16 02:36:23 -06:00
7a76a6ee36 Implement python-side unified support, add example 2022-08-16 02:35:31 -06:00
06285556c9 Move unified L-J initialization to definition 2022-08-16 02:34:15 -06:00
af5eacfe8c Merge branch 'lammps:develop' into mliappy_unified 2022-08-10 21:58:37 -06:00
f1cca7d37d Update __init__.py 2022-08-10 12:22:29 -06:00
fd2ab2a8b9 Update __init__.py 2022-08-08 12:08:46 -06:00
953d2c738b Update __init__.py 2022-08-08 11:45:43 -06:00
2227de3231 Update __init__.py 2022-08-07 23:00:35 -06:00
2d3504ff0f Locate correct dynamics library directories
in Anaconda Environments
2022-08-07 22:54:59 -06:00
f966b53bd2 Merge branch 'lammps:develop' into mliappy_unified 2022-07-14 02:11:45 -06:00
ac615059a7 update some linewraps for 100 col limit 2022-06-20 18:15:02 -04:00
ffc5b12c5f correct handling data of local computes which always needs to check rows and cols 2022-06-20 18:10:57 -04:00
1aaa9ca4ae Added documentation for verbose option 2022-05-24 12:02:34 +02:00
b66702c285 Added verbose class option + removed empty output lines 2022-05-24 11:37:44 +02:00
a43b24781c Merge branch 'develop' into mliappy_unified 2022-05-20 11:26:54 -06:00
baa48946e5 add comment to please CodeQL 2022-05-18 00:56:10 -04:00
168d3bdd3c Correctly handle the case that the YAML python module is not installed 2022-05-14 10:15:40 -04:00
3045f1d3cb Add pickle method to base class 2022-05-13 14:45:44 -06:00
ebbace403a Initial commit of mliap unified work 2022-04-15 14:22:46 -06:00
8ce2ce8fd4 remove unused import 2022-04-09 04:02:01 -04:00
8cdce34b27 Merge branch 'develop' into dump-style-yaml 2022-04-08 18:42:28 -04:00
fc24cf15ce Merge pull request #3197 from akohlmey/custom-thermo-headers
add support for custom header keywords with thermo output and dump styles
2022-04-08 17:29:35 -04:00