Commit Graph

12292 Commits

Author SHA1 Message Date
469846e73c correct broken doc line 2025-06-22 07:22:36 -04:00
c118af34e0 small doc update 2025-06-21 17:58:49 -04:00
e3b1d27e0a whitespace 2025-06-21 14:34:01 -04:00
fc9efa1586 update documentation for the recently added sections in JSON format molecule files 2025-06-21 13:48:11 -04:00
67582ebf14 some error hint updates based on recent discussions on MatSci.org 2025-06-20 17:45:37 -04:00
fb088cdc57 require .json extension for JSON format molecule files 2025-06-20 14:12:00 -04:00
18455d07fe list possible pair styles with SPC Howto. Add comment about cutof vs. long-range coulomb 2025-06-20 04:24:13 -04:00
632bc8f20d Removed line apparently copied from compute displace/atom 2025-06-17 14:56:43 +02:00
9a81c95104 document unchanging group size restriction in compute msd 2025-06-17 06:02:43 -04:00
53fec5563c Merge pull request #4543 from d-immel/apip
adaptive-precision interatomic potentials (APIP)
2025-06-16 15:56:12 -04:00
6004a58ab4 fix spelling issues 2025-06-14 17:59:01 -04:00
2d5f02a398 add lammps_add_molecule API to the C-library interface and python/fortran module 2025-06-14 12:46:36 -04:00
848ef74459 download sphinx_toolbox extension and enable "collaps" directive 2025-06-14 06:04:54 -04:00
1ba1b7111d Merge branch 'develop' into apip 2025-06-13 08:42:29 -04:00
ee165e72de minor changes of APIP doc page 2025-06-13 12:15:03 +02:00
336bb4622d add a few missing version tags 2025-06-13 00:08:05 -04:00
380ad17cf3 Merge branch 'develop' into next_release 2025-06-13 00:01:50 -04:00
949bac6b4a Merge pull request #4614 from akohlmey/collected-small-fixes
Collected small changes and fixes
2025-06-12 23:59:06 -04:00
4865235998 small doc tweaks and update for the simplified installation 2025-06-12 22:49:38 -04:00
6df845a8d8 Merge remote-tracking branch 'github/develop' into apip 2025-06-12 22:27:03 -04:00
550048f458 Merge branch 'develop' into molecule-refactor-for-json 2025-06-12 21:21:38 -04:00
f9de296ed1 make "coords" optional and infer natoms from "types" instead 2025-06-12 21:19:32 -04:00
a9c5d095e4 Merge pull request #4621 from akohlmey/plugin-add-run-min-style
Add support for run and minimize style plugins and refactor plugin handling to become global
2025-06-12 20:35:15 -04:00
9b195d2109 Merge branch 'develop' into molecule-refactor-for-json 2025-06-12 14:23:32 -04:00
db835d1ec5 add false positive 2025-06-12 14:23:25 -04:00
ed1d49cc16 Merge branch 'python-wrapper-doc' of github.com:lammps/lammps into python-wrapper-doc 2025-06-12 11:48:45 -04:00
db22bdc7b9 rewrap doc source 2025-06-12 11:48:37 -04:00
674500781f add minimal documentation for the JSON molecule file format 2025-06-12 11:20:02 -04:00
dd30b5a258 add tool to regularize/reformat/reindent JSON files 2025-06-12 11:19:16 -04:00
2eed658d85 Corrected what I think is a typo
There is no way to evaluate a variable with iv_ prefix.
2025-06-12 15:57:59 +02:00
1db87d827d documentation updates for JSON format in general and molecule files in particular 2025-06-12 07:49:20 -04:00
768d5bb9c1 address small PDF formatting issue 2025-06-11 10:56:04 -04:00
c4e062f2d8 Merge branch 'develop' into molecule-refactor-for-json 2025-06-11 08:40:48 -04:00
6ccb1b745c remove debug code, move to toplevel dir and document kspace style zero 2025-06-11 04:24:35 -04:00
0fd7a40d92 update documentation for writing plugins 2025-06-11 03:40:33 -04:00
30cc2570ad Merge branch 'develop' into plugin-add-run-min-style 2025-06-11 03:24:04 -04:00
df08818fef refactor handling of plugin loading to make plugin a global property 2025-06-11 02:52:28 -04:00
464b9f4b03 add support for loading run and min styles 2025-06-11 00:33:44 -04:00
8d11f16e16 Insert pre-titlepage text asking about removal of PDF version. 2025-06-10 19:27:01 -04:00
8ae5b16d66 use consistent markup 2025-06-10 18:18:50 -04:00
c8cd692bbd more doc page tweaks 2025-06-10 15:25:15 -06:00
1f57be8255 another tweak 2025-06-09 16:50:43 -06:00
7a7ec8083f edits of 2 doc pages 2025-06-09 16:38:42 -06:00
c7fd0817e2 Merge branch 'develop' into collected-small-fixes 2025-06-09 00:14:23 -04:00
3f685e9a44 fix several spelling and formatting issues in added/modified documentation 2025-06-06 12:13:02 -04:00
ccc078f036 Add apip to documentation of read_dump and compute property/atom. 2025-06-06 14:41:52 +02:00
9a65ab2c4d Merge branch 'develop' into apip_devel and solve merge conflict in set. 2025-06-06 13:32:00 +02:00
65debaf191 resolve NOTES and add option to print return value to log with python invoke 2025-06-06 02:02:04 -04:00
f69d28fbab Merge branch 'develop' into atom-style-var-with-python 2025-06-06 00:20:06 -04:00
6c798f1847 Update APIP naming in documentation. 2025-06-05 20:05:37 +02:00