Commit Graph

75 Commits

Author SHA1 Message Date
71f086e159 implemented scatter, gather, and friends; wrote and updated documentation 2022-12-02 17:19:42 -06:00
c2a0660112 Bug fix and unit tests for fix external-related commands 2022-12-01 23:49:17 -06:00
a87aff7b87 Fixed bug and wrote unit tests for fix_external_array functions 2022-11-30 22:48:29 -06:00
8579b117af Implemented remaining fix_external functions and documentation 2022-11-29 23:23:14 -06:00
aecd3841be Initial implementation of fix_external_get_force 2022-11-29 18:28:52 -06:00
5f9956405a Updated docs and wrote unit tests for lmp_set_fix_external_callback; fixed typos 2022-11-29 15:37:15 -06:00
170c312a0c Fixed oversight in set_fix_external_callback and wrote its documentation 2022-11-24 21:07:46 -06:00
95841b0efd Implementation (after several failures) of set_fix_external_callback 2022-11-21 22:38:10 -06:00
135c6f24ad Merge branch 'develop' into fortran-expansion 2022-10-31 17:57:33 -04:00
c214a81526 increase portability and standard conformance 2022-10-31 13:05:53 -04:00
0aa20872ca Eliminate gfortran -Wall warnings 2022-10-30 16:42:10 -05:00
d3ed99c7f8 Optional arguments for find_*_neighlist 2022-10-28 21:01:12 -05:00
73bf0334e4 Fixed optional parameters in find_pair_neighlist 2022-10-28 20:53:46 -05:00
78910eb0e1 add comment that this file needs to be updated when APIs are added 2022-10-28 21:13:50 -04:00
55dafc110d Unit tests and some off-by-one errors 2022-10-28 19:09:31 -05:00
624e230f4d several bugs fixed; unit tests updated 2022-10-28 00:51:04 -05:00
1e29c83be3 Merge branch 'fortran-expansion' of github.com:hammondkd/lammps into fortran-expansion 2022-10-27 14:12:38 -05:00
4216ca604c Refactored copying of strings from C to Fortran to avoid duplication 2022-10-27 14:12:26 -05:00
b8781aca15 Implemented plugin_name and plugin_count and their docs 2022-10-26 00:02:54 -05:00
19f93009c1 Implemented and documented has_id, id_count, and id_name 2022-10-25 19:51:08 -05:00
e68efc039f Resolved merging conflicts in three files 2022-10-25 14:37:33 -05:00
8c5ebb3942 Edit to make auto-merging easier 2022-10-25 08:34:48 -05:00
463ff1499c Added reminder to fortran/lammps.f90 in sync with tools/swig/lammps.i 2022-10-24 11:52:51 -05:00
a7d55526e8 update developer info 2022-10-24 11:06:32 -04:00
785b46e57b Implemented lmp_gather_bonds, lmp_find_*_neighlist, lmp_neighlist_num_elements, and their unit tests and documentation 2022-10-24 01:00:48 -05:00
a8670f1ce9 Fixed potential inconsistency in lmp_error 2022-10-21 13:44:39 -05:00
60318a5a26 Refactor Fortran properties test into configuration; implemented several configuration functions and wrote unit tests for them; implemented missing unit tests 2022-10-20 20:24:59 -05:00
34121e5545 Implemented decode_image_flags and its unit test; updated documentation 2022-10-20 00:27:57 -05:00
b51c50294e implemented create_atoms and encode_image_flags and unit tests for them; added IMGMASK and friends to extract_setting and unit tests for them; wrote documentation for them 2022-10-19 18:40:12 -05:00
9a732ba513 Fortran implementation of create_atoms + unittests 2022-10-19 09:56:54 -05:00
3a4d4b0756 Merge branch 'fortran-further-tinkering' of github.com:hammondkd/lammps into fortran-further-tinkering 2022-10-05 14:30:30 -05:00
e3b5514b62 I just learned that FORALL is obsolescent in Fortran 2018; removed 2022-10-05 14:30:02 -05:00
80da4c307c silence compiler warnings, avoid integer or buffer overflows 2022-10-05 10:52:17 -04:00
4e9b97d5cb make capitalization and whitespace fortran coding style more consistent 2022-10-03 23:49:17 -04:00
af3d618f47 complete implementation of looking up last error message and include test 2022-10-03 23:18:44 -04:00
a9ba96252a Added warning message if we ever assign to a too-short string; fixed array-reference typo that -f2003 helped catch 2022-10-03 17:44:09 -05:00
db9b59c269 Implemented scatter_atoms and scatter_atoms_subset + unit tests + documentation + typos/edits 2022-10-02 20:32:42 -05:00
c5c21bb36c Implemented, tested, and documented gather_atoms and variants; added RST docs for lammps_scatter_atoms and lammps_gather_atoms and variants (library.cpp); checked for missing atom map in lammps_gather_atoms_subset; fixed bug in keepstuff.f90; fixed docs for extract_variable 2022-10-02 15:28:10 -05:00
953c3d0cad spell check; updated false positives; whitespace 2022-09-30 18:50:16 -05:00
d301ff9961 Added set_variable and a test for it 2022-09-30 18:31:18 -05:00
756d24ff9e Implemented vector-style variables in C, Python, and Fortran APIs; unit test and more for Fortran/extract_variable 2022-09-30 16:02:26 -05:00
8ee17edcab Implemented more unit tests; stuck on atomfile 2022-09-29 23:39:39 -05:00
a7071fea78 Wrote docs for extract_fix,extract_variable; fixed python so it knows about string variables; doc typo fixes; part of extract_variable unit test 2022-09-29 19:28:15 -05:00
1d4297e2dd Implemented extract_fix, extract_variable, flush_buffers; unit test for extract_fix 2022-09-28 22:09:26 -05:00
e22699197d Added flush_buffers 2022-09-28 07:40:06 -05:00
2072e08624 added get_last_error_message; still working on its unit test 2022-09-26 21:56:03 -05:00
1072a5bda2 Added unit test for has_error 2022-09-26 09:21:41 -05:00
7cd5d7b357 Added lammps_has_error 2022-09-26 08:57:03 -05:00
bada1fb348 Finished extract_compute and its unit tests and documentation 2022-09-25 23:54:18 -05:00
69627eee8d Merged with fortran-tinkering 2022-09-23 22:11:24 -05:00