Commit Graph

41069 Commits

Author SHA1 Message Date
755e71e5a2 Missing space between words 2024-11-04 16:09:10 -07:00
34113226ae Updating pair tracker example 2024-11-04 13:57:54 -07:00
5ce635757f Simplifying smoothing for bpm/rotational bond style 2024-11-04 13:42:09 -07:00
778693c300 Minor clean ups to BPM bonds 2024-11-04 13:31:51 -07:00
645d02d13b sph typo 2024-11-04 13:30:37 -07:00
3b3d39a8cd Minor granular include clean up 2024-11-04 13:29:32 -07:00
3e531b9842 Adding clarifying comment 2024-11-04 13:24:27 -07:00
bf888045d6 Fixing memory seg fault w/ multi occasional nlist 2024-11-04 13:16:07 -07:00
d2f761f8ed Avoiding potential segfault with granular rolling model 2024-11-04 12:42:04 -07:00
10767b1247 Merge branch 'develop' into small-patches 2024-11-04 12:37:57 -07:00
6d634dc646 Merge pull request #4359 from jtclemm/BPM
Adding new force options to BPM package
2024-10-29 21:31:03 -04:00
ef1148dfa0 remove write_data support from BPM bond styles again and consolidate names 2024-10-27 22:06:56 -04:00
6d0e633edf Merge pull request #4352 from ndtrung81/regression-test-update
Add a KOKKOS workflow for GitHub actions and minor updates for the regression tester
2024-10-25 11:06:33 -04:00
f09a9c1c2a fix typo in cmake command 2024-10-24 10:26:18 -05:00
25eaf38cee use the kokkos-openmp preset for brevity 2024-10-24 10:18:59 -05:00
3041443e5f Merge pull request #4357 from akohlmey/collected-small-changes
Collected small changes and fixes
2024-10-23 23:25:26 -04:00
73c049459b spelling 2024-10-23 21:10:34 -04:00
fdd2fc4f5d move error check to Compute::init() so they cannot be bypassed by input commands 2024-10-23 21:08:07 -04:00
b682f52d11 fix typos 2024-10-23 21:07:39 -04:00
f207a571f3 allow fix DUMMY to be added without a box 2024-10-23 21:00:33 -04:00
3bac6d7cde Adding bpm pair write data method, blocking unreadable vol atom property in bond 2024-10-23 11:56:07 -06:00
b810053d02 document restrictions for bonded interactions 2024-10-23 12:35:50 -04:00
ab961a006e Merge remote-tracking branch 'github/develop' into collected-small-changes 2024-10-23 12:25:22 -04:00
558b1c5197 apply clang-format, fix other minor formatting issues, use error->one() 2024-10-23 12:10:28 -04:00
077c77f402 contributions from bonded interactions is broken when running in parallel
see https://matsci.org/t/missing-bond-contributions-from-compute-stress-mop/58455
for details.
2024-10-23 12:09:35 -04:00
d2b1e22b4a added counter for timeout tests 2024-10-22 23:31:22 -05:00
06207fd91e modify how execute() returns 2024-10-22 23:21:37 -05:00
8e81ac8c42 Merge branch 'develop' into BPM 2024-10-22 22:21:57 -04:00
bef64fd602 use consistent fix id and create bond history fix only when required 2024-10-22 22:21:28 -04:00
53b1ba6131 rename id_fix to id_fix_prop_bond for consistency, fix bug when deleting/replacing fixes 2024-10-22 21:56:19 -04:00
e2214fc4d6 Merge branch 'develop' into regression-test-update 2024-10-22 21:10:22 -04:00
e214f60d4f Merge pull request #4358 from junghans/cmake_voro_rename
cmake: voro target to upstream name
2024-10-22 21:07:28 -04:00
81f71716ba Merge branch 'develop' into BPM 2024-10-22 20:59:12 -04:00
a5599f2b75 implement write_data(), delete created internal fix in destructor, formatting 2024-10-22 20:59:00 -04:00
83db9b8fe6 small cleanup and modernization 2024-10-22 10:25:22 -04:00
ec5dfcd0fb remove note that was obsoleted 5 years ago 2024-10-22 09:50:30 -04:00
1678e2af28 adjusting howto text to reflect additional BPM/spring options. 2024-10-21 21:21:15 -06:00
e8c5e58ab9 Adding clarifying comments 2024-10-21 16:25:38 -06:00
c8bbfc368a Initializing dvol array in bpm/spring 2024-10-21 16:23:35 -06:00
58ff8d3212 Suppressing dump output in bpm examples 2024-10-21 15:18:17 -06:00
4779cc44ef documenting bpm anharmonic 2024-10-21 15:07:24 -06:00
baf1733b9a documenting bpm multibody 2024-10-21 15:07:06 -06:00
722133b60c typo 2024-10-21 15:06:33 -06:00
289845b187 Adding anharmonic term to bpm/spring pair 2024-10-21 15:06:21 -06:00
a302bfed5a Adding multibody term to bpm/spring 2024-10-21 15:05:55 -06:00
05ee6bed3d Adding dividers for gran CoR model 2024-10-21 15:02:52 -06:00
760d871b7a enabled and apply clang-format 2024-10-19 11:02:53 -04:00
34ab2f862a small tweaks 2024-10-18 22:09:25 -04:00
f128abe002 improve OPLS description 2024-10-18 21:51:43 -04:00
2074b0c400 add check to allow only valid swaps between hybrid sub-styles and document it 2024-10-18 21:49:55 -04:00