Commit Graph

43774 Commits

Author SHA1 Message Date
8c9e1fe6a2 update pimd/*/bosonic examples 2025-03-13 04:00:54 -04:00
009a7b1916 print detailed version string also for multi-replica runs 2025-03-13 03:58:51 -04:00
0812d3c772 must use delete[] on array allocated with new 2025-03-13 03:58:33 -04:00
71c8c2aaa2 improve error messages 2025-03-13 03:58:12 -04:00
933f618eb4 update .gitignore 2025-03-13 03:57:41 -04:00
0a4a2f6deb Merge branch 'develop' into collected-small-fixes 2025-03-13 03:06:14 -04:00
bdb661451d revert unintended commit 2025-03-13 03:00:24 -04:00
a892495575 revert unintended commit 2025-03-13 02:59:43 -04:00
24444f2f7c use minimal CSS file and explicit template 2025-03-12 23:45:48 -04:00
fd06c20a6a fix copy-n-paste error 2025-03-12 22:58:33 -04:00
f158b5195e add explanation for "did not assign all atoms" 2025-03-12 22:51:29 -04:00
33ac6c8836 address several issues related to variables and improve error messages 2025-03-12 22:33:07 -04:00
16ed78f435 Merge remote-tracking branch 'github/develop' into add-error-explanations 2025-03-12 20:36:18 -04:00
6d6fce7866 provide explanation for "variable evaluated before simulation box is defined" 2025-03-12 20:36:01 -04:00
084bdb2da6 Merge pull request #4496 from gplummer317/ctip
CTIP citation update
2025-03-12 19:59:17 -04:00
c3976a444c Merge branch 'develop' into use-pandoc-for-fasthtml 2025-03-12 19:54:58 -04:00
377c423e42 Update pair_coul.rst
Updated CTIP citation
2025-03-12 15:17:31 -07:00
063d595233 Update pair_coul.rst
Updated CTIP citation
2025-03-12 15:16:59 -07:00
9c4181e42e Update fix_qeq.rst
Updated CTIP citation
2025-03-12 15:15:35 -07:00
bd7420e496 Merge remote-tracking branch 'github/develop' into add-error-explanations 2025-03-12 18:08:53 -04:00
130b898e26 update documentation for new "make fasthtml" 2025-03-12 17:50:27 -04:00
c7f5d07a68 modernize LaTeX for formatting text in math mode 2025-03-12 17:14:11 -04:00
42219ac784 modernize LaTeX for formatting text in math mode 2025-03-12 17:08:56 -04:00
1931427a57 handle custom \AA macro for pandoc processing 2025-03-12 17:06:07 -04:00
24ce7bedcd Merge pull request #4493 from ssande7/correlate_first
Add `type first` option to correlation fixes
2025-03-12 16:33:38 -04:00
f097e8d951 Merge pull request #4479 from yotamfe/bosonic-pimd-langevin
Adding support for bosonic path integral molecular dynamics simulations
2025-03-12 15:28:51 -04:00
1b31064921 replace "fast" Sphinx build with build using pandoc for "fasthtml" target 2025-03-12 15:14:31 -04:00
38903fb7d2 replace (evil) tabs with spaces 2025-03-12 14:30:33 -04:00
9aba2c91c9 add citation reminder to fix qtpie/reaxff 2025-03-12 14:25:58 -04:00
3e62e660e5 Update fix_pimd_bosonic.rst - delete trailing whitespace 2025-03-12 18:20:30 +02:00
4a2d78fd99 Update fix_pimd.rst - delete trailing whitspace 2025-03-12 18:19:48 +02:00
d0aabe57bc better grammar 2025-03-12 11:59:34 -04:00
1cc69bd0df support referencing the general advice paragraphs 2025-03-12 11:58:30 -04:00
e3bf1a194d fix typos 2025-03-12 11:56:40 -04:00
930d3ddc17 resolve spelling and formatting issues 2025-03-12 11:53:57 -04:00
508eeddf87 Merge branch 'develop' into add-error-explanations 2025-03-12 11:39:13 -04:00
ebf6ba36bf remove leading 0 in single-digit url codes 2025-03-12 07:39:45 -06:00
90c713d065 update details on errors 6, 7, 8, 10, 13, and warning 28 2025-03-12 07:33:07 -06:00
d1671c24c4 add url for warning 28 2025-03-12 07:28:58 -06:00
fa262967e6 add url for error 10 2025-03-12 07:28:22 -06:00
6d42040b9d add url for error 13 2025-03-12 07:26:59 -06:00
70faf86040 add urls for error 08 2025-03-12 07:25:09 -06:00
ab63993226 add urls for error 07 2025-03-12 07:23:56 -06:00
2c2eaf09e6 add urls for error 06 2025-03-12 07:22:47 -06:00
1507d3511f Update fix_pimd.rst - added related commands 2025-03-12 12:45:24 +02:00
aa020c0ad3 Update fix_pimd_bosonic.rst - added related commands 2025-03-12 12:43:37 +02:00
d076b1c582 Update fix.rst - changed pimd/* to pimd/*/bosonic where needed 2025-03-12 12:38:09 +02:00
c144fc0fc6 Fix constant i for type first 2025-03-12 08:14:48 +10:00
5068406c03 fixed incorrect path to the potential file 2025-03-11 16:41:41 -05:00
0004a384fe fixed issues with several input scripts, added reference log files 2025-03-11 16:10:04 -05:00