Commit Graph

8005 Commits

Author SHA1 Message Date
d2684a2370 Merge branch 'master' into package-reorganization2 2021-07-23 07:41:10 -04:00
ff7f2e78a1 Merge branch 'master' into fix-external-python-support 2021-07-22 23:09:54 -04:00
e12070316b fix spelling issue 2021-07-21 22:00:18 -04:00
f8f4af471f general rename of files, styles, and keywords from "reax/c", "reax", or "reaxc" to "reaxff" 2021-07-21 21:52:25 -04:00
f53c1978cc swap groups in the example snippet to get consistent pressure and heat flux sign 2021-07-21 10:23:12 -04:00
d16f751413 Merge branch 'master' into package-reorganization2 2021-07-21 10:23:04 -04:00
cf3bf374fa Merge branch 'master' into refactor-reaxff-parser 2021-07-21 00:30:53 -04:00
6604508b55 Merge branch 'master' into collected-small-changes 2021-07-20 19:39:10 -04:00
96389213ab Merge pull request #2788 from jtclemm/track-contacts
Track properties of pair interactions
2021-07-20 19:38:21 -04:00
b9cc8c8d24 Merge branch 'master' into collected-small-changes 2021-07-20 18:14:02 -04:00
2718596d65 Merge pull request #2835 from ohenrich/cg-dna
Documentation: CG-DNA package
2021-07-20 18:03:34 -04:00
63794aa698 Merge branch 'master' into track-contacts
# Conflicts:
#	doc/src/Packages_details.rst
#	src/DIELECTRIC/pair_coul_cut_dielectric.h
#	src/MISC/fix_pair_tracker.cpp
#	src/MISC/fix_pair_tracker.h
#	src/MISC/pair_tracker.cpp
#	src/MISC/pair_tracker.h
#	src/pair_tracker.h
2021-07-20 16:19:38 -04:00
06d5bcb19b Merge branch 'master' into collected-small-changes 2021-07-20 16:02:46 -04:00
d8ca3e4b16 add support for automatically downloading and building libquip 2021-07-20 16:00:42 -04:00
eeea566093 correct typo 2021-07-20 14:32:30 -04:00
2a4b60d597 in the output info section: flux -> flow 2021-07-20 18:03:11 +09:00
6fd1cda2a6 update documentaion for heat/flux/tally and heat/flux/virial/tally 2021-07-20 17:48:12 +09:00
cfd9e31d18 add links to heat/flux/virial/tally and add short descriptions for tally computes 2021-07-20 13:31:41 +09:00
a1082f4de9 fix typo 2021-07-19 12:15:43 -04:00
52156ccb35 Merge branch 'master' into package-reorganization2 2021-07-19 11:07:42 -04:00
ef72ea9dd9 Fixed whitespace issues 2021-07-19 11:49:27 +01:00
2881f95d7a Merge branch 'cg-dna' of https://github.com/ohenrich/lammps into cg-dna 2021-07-19 11:23:50 +01:00
15b3b6445e Updated tests and documentation, added warning message 2021-07-19 11:22:06 +01:00
536ba492fb error out on trying to dump strings or variables 2021-07-18 17:47:01 -04:00
57df891572 avoid duplicate label 2021-07-17 07:49:41 -04:00
fa654f2270 add support for set_vector for fix external in c-library, python and unittest 2021-07-16 23:41:25 -04:00
f3dc13c9dd expand library interface for fix external functionality 2021-07-16 17:29:15 -04:00
fb1e757524 Merge branch 'lammps:master' into cg-dna 2021-07-16 12:58:26 +01:00
b7a17dc25d Added warning message in documentation and dsDNA ring test in examples 2021-07-16 12:57:21 +01:00
741e13743c Merge branch 'master' into refactor-reaxff-parser 2021-07-15 17:23:56 -04:00
95792ac928 Merge pull request #2833 from athomps/delete-last-mol
Delete last mol
2021-07-15 17:16:48 -04:00
dc70f97ad4 restore changes from upstream that were undone by incorrectly resolving merge conflicts 2021-07-15 15:44:35 -04:00
d97ea4ebf6 make dependency of CG-DNA on ASPHERE and MOLECULE a hard dependency 2021-07-15 15:42:50 -04:00
e99b8ed07c Merge branch 'master' into cg-dna 2021-07-15 13:37:24 +01:00
fb73382c94 Documented restriction on molecular count >= 1 for fix rigid 2021-07-14 11:13:54 -06:00
757e2f8cff Merge branch 'master' into refactor-reaxff-parser
# Conflicts:
#	doc/src/fix_qeq_reax.rst
#	src/OPENMP/reaxc_bond_orders_omp.h
#	src/OPENMP/reaxc_bonds_omp.h
#	src/OPENMP/reaxc_forces_omp.h
#	src/OPENMP/reaxc_hydrogen_bonds_omp.h
#	src/OPENMP/reaxc_init_md_omp.cpp
#	src/OPENMP/reaxc_init_md_omp.h
#	src/OPENMP/reaxc_multi_body_omp.h
#	src/OPENMP/reaxc_nonbonded_omp.h
#	src/OPENMP/reaxc_torsion_angles_omp.h
#	src/OPENMP/reaxc_valence_angles_omp.h
#	src/OPENMP/reaxff_omp.h
#	src/Purge.list
#	src/QEQ/fix_qeq.cpp
#	src/QEQ/fix_qeq.h
#	src/QEQ/fix_qeq_dynamic.cpp
#	src/QEQ/fix_qeq_fire.cpp
#	src/REAXFF/fix_qeq_reax.cpp
#	src/REAXFF/reaxc_allocate.h
#	src/REAXFF/reaxc_bond_orders.h
#	src/REAXFF/reaxc_bonds.h
#	src/REAXFF/reaxc_control.h
#	src/REAXFF/reaxc_defs.h
#	src/REAXFF/reaxc_ffield.h
#	src/REAXFF/reaxc_forces.h
#	src/REAXFF/reaxc_hydrogen_bonds.h
#	src/REAXFF/reaxc_init_md.cpp
#	src/REAXFF/reaxc_init_md.h
#	src/REAXFF/reaxc_io_tools.cpp
#	src/REAXFF/reaxc_io_tools.h
#	src/REAXFF/reaxc_list.h
#	src/REAXFF/reaxc_lookup.h
#	src/REAXFF/reaxc_multi_body.h
#	src/REAXFF/reaxc_nonbonded.h
#	src/REAXFF/reaxc_reset_tools.h
#	src/REAXFF/reaxc_system_props.cpp
#	src/REAXFF/reaxc_system_props.h
#	src/REAXFF/reaxc_tool_box.h
#	src/REAXFF/reaxc_torsion_angles.h
#	src/REAXFF/reaxc_traj.cpp
#	src/REAXFF/reaxc_traj.h
#	src/REAXFF/reaxc_types.h
#	src/REAXFF/reaxc_valence_angles.h
#	src/REAXFF/reaxc_vector.cpp
#	src/REAXFF/reaxc_vector.h
#	src/REAXFF/reaxff_api.h
#	src/REAXFF/reaxff_defs.h
#	src/REAXFF/reaxff_inline.h
#	src/REAXFF/reaxff_types.h
#	src/text_file_reader.cpp
#	src/text_file_reader.h
#	unittest/force-styles/tests/atomic-pair-reax_c.yaml
#	unittest/force-styles/tests/atomic-pair-reax_c_lgvdw.yaml
#	unittest/force-styles/tests/atomic-pair-yukawa_colloid.yaml
2021-07-12 14:25:47 -04:00
0540ce547b Merge branch 'master' into package-reorganization2 2021-07-12 11:45:27 -04:00
6134164ad3 pair style rann does not support per-atom stress or pair_modify nofdotr 2021-07-11 20:03:52 -04:00
eecc012525 sphinx 4.1.0 failes to parse utils::logmesg(lmp,format,...) template function 2021-07-11 14:56:47 -04:00
9898941169 update tersoff docs about tersoff/intel requiring intel compilers 2021-07-11 08:00:01 -04:00
6571a84884 move some styles around 2021-07-09 16:54:00 -04:00
b2a396da3c Merge pull request #2828 from tomswinburne/snap-scale
Adding scale parameter to pair/snap for fix/adapt
2021-07-07 16:10:11 -04:00
46d5d9724a move interlayer potentials to their own package 2021-07-07 15:52:53 -04:00
39bd342913 Resolved conflict 2021-07-07 10:04:05 +01:00
c9ddee5e38 Merge pull request #2824 from ndtrung81/dielectric-updates
Updates to the DIELECTRIC package
2021-07-06 20:58:23 -04:00
91790e8586 Update Commands_kspace.rst 2021-07-06 20:21:34 -04:00
d041e5cba0 we require at least zstd API version 1.4 2021-07-06 13:39:07 -04:00
71f82e81d7 Merge branch 'snap-scale' into fm 2021-07-06 17:23:24 +02:00
3675bef2b0 doc 2021-07-06 14:06:27 +02:00
4b81802ae8 Created new feature branch for PR as per request 2021-07-05 16:07:40 +01:00