Commit Graph

1782 Commits

Author SHA1 Message Date
d2684a2370 Merge branch 'master' into package-reorganization2 2021-07-23 07:41:10 -04:00
c78d4eab36 update standard examples for new style names 2021-07-21 22:52:43 -04:00
f8f4af471f general rename of files, styles, and keywords from "reax/c", "reax", or "reaxc" to "reaxff" 2021-07-21 21:52:25 -04:00
d16f751413 Merge branch 'master' into package-reorganization2 2021-07-21 10:23:04 -04:00
cf3bf374fa Merge branch 'master' into refactor-reaxff-parser 2021-07-21 00:30:53 -04:00
6604508b55 Merge branch 'master' into collected-small-changes 2021-07-20 19:39:10 -04:00
96389213ab Merge pull request #2788 from jtclemm/track-contacts
Track properties of pair interactions
2021-07-20 19:38:21 -04:00
8a4820a033 add data/units comments to example quip potential files 2021-07-20 19:31:52 -04:00
63794aa698 Merge branch 'master' into track-contacts
# Conflicts:
#	doc/src/Packages_details.rst
#	src/DIELECTRIC/pair_coul_cut_dielectric.h
#	src/MISC/fix_pair_tracker.cpp
#	src/MISC/fix_pair_tracker.h
#	src/MISC/pair_tracker.cpp
#	src/MISC/pair_tracker.h
#	src/pair_tracker.h
2021-07-20 16:19:38 -04:00
52156ccb35 Merge branch 'master' into package-reorganization2 2021-07-19 11:07:42 -04:00
15b3b6445e Updated tests and documentation, added warning message 2021-07-19 11:22:06 +01:00
b7a17dc25d Added warning message in documentation and dsDNA ring test in examples 2021-07-16 12:57:21 +01:00
741e13743c Merge branch 'master' into refactor-reaxff-parser 2021-07-15 17:23:56 -04:00
e99b8ed07c Merge branch 'master' into cg-dna 2021-07-15 13:37:24 +01:00
0f0059269d Modified data_bonds_post() and calling structure 2021-07-15 13:36:40 +01:00
757e2f8cff Merge branch 'master' into refactor-reaxff-parser
# Conflicts:
#	doc/src/fix_qeq_reax.rst
#	src/OPENMP/reaxc_bond_orders_omp.h
#	src/OPENMP/reaxc_bonds_omp.h
#	src/OPENMP/reaxc_forces_omp.h
#	src/OPENMP/reaxc_hydrogen_bonds_omp.h
#	src/OPENMP/reaxc_init_md_omp.cpp
#	src/OPENMP/reaxc_init_md_omp.h
#	src/OPENMP/reaxc_multi_body_omp.h
#	src/OPENMP/reaxc_nonbonded_omp.h
#	src/OPENMP/reaxc_torsion_angles_omp.h
#	src/OPENMP/reaxc_valence_angles_omp.h
#	src/OPENMP/reaxff_omp.h
#	src/Purge.list
#	src/QEQ/fix_qeq.cpp
#	src/QEQ/fix_qeq.h
#	src/QEQ/fix_qeq_dynamic.cpp
#	src/QEQ/fix_qeq_fire.cpp
#	src/REAXFF/fix_qeq_reax.cpp
#	src/REAXFF/reaxc_allocate.h
#	src/REAXFF/reaxc_bond_orders.h
#	src/REAXFF/reaxc_bonds.h
#	src/REAXFF/reaxc_control.h
#	src/REAXFF/reaxc_defs.h
#	src/REAXFF/reaxc_ffield.h
#	src/REAXFF/reaxc_forces.h
#	src/REAXFF/reaxc_hydrogen_bonds.h
#	src/REAXFF/reaxc_init_md.cpp
#	src/REAXFF/reaxc_init_md.h
#	src/REAXFF/reaxc_io_tools.cpp
#	src/REAXFF/reaxc_io_tools.h
#	src/REAXFF/reaxc_list.h
#	src/REAXFF/reaxc_lookup.h
#	src/REAXFF/reaxc_multi_body.h
#	src/REAXFF/reaxc_nonbonded.h
#	src/REAXFF/reaxc_reset_tools.h
#	src/REAXFF/reaxc_system_props.cpp
#	src/REAXFF/reaxc_system_props.h
#	src/REAXFF/reaxc_tool_box.h
#	src/REAXFF/reaxc_torsion_angles.h
#	src/REAXFF/reaxc_traj.cpp
#	src/REAXFF/reaxc_traj.h
#	src/REAXFF/reaxc_types.h
#	src/REAXFF/reaxc_valence_angles.h
#	src/REAXFF/reaxc_vector.cpp
#	src/REAXFF/reaxc_vector.h
#	src/REAXFF/reaxff_api.h
#	src/REAXFF/reaxff_defs.h
#	src/REAXFF/reaxff_inline.h
#	src/REAXFF/reaxff_types.h
#	src/text_file_reader.cpp
#	src/text_file_reader.h
#	unittest/force-styles/tests/atomic-pair-reax_c.yaml
#	unittest/force-styles/tests/atomic-pair-reax_c_lgvdw.yaml
#	unittest/force-styles/tests/atomic-pair-yukawa_colloid.yaml
2021-07-12 14:25:47 -04:00
0540ce547b Merge branch 'master' into package-reorganization2 2021-07-12 11:45:27 -04:00
41a434ae1f fix compilation issues with new/old Intel compilers 2021-07-11 14:09:17 -04:00
6571a84884 move some styles around 2021-07-09 16:54:00 -04:00
b2a396da3c Merge pull request #2828 from tomswinburne/snap-scale
Adding scale parameter to pair/snap for fix/adapt
2021-07-07 16:10:11 -04:00
46d5d9724a move interlayer potentials to their own package 2021-07-07 15:52:53 -04:00
39bd342913 Resolved conflict 2021-07-07 10:04:05 +01:00
71f82e81d7 Merge branch 'snap-scale' into fm 2021-07-06 17:23:24 +02:00
3675bef2b0 doc 2021-07-06 14:06:27 +02:00
4b81802ae8 Created new feature branch for PR as per request 2021-07-05 16:07:40 +01:00
430e7e962f Merge branch 'master' into dielectric-updates
# Conflicts:
#	src/DIELECTRIC/Install.sh
#	src/DIELECTRIC/pppm_disp_dielectric.cpp
#	src/DIELECTRIC/pppm_disp_dielectric.h
2021-07-03 15:27:57 -04:00
021e8a404d Updated example data files 2021-07-02 12:20:26 -05:00
58196d57f1 New package DPD-BASIC with pair styles dpd, dpd/tstat, dpd/ext, dpd/ext/tstat 2021-07-01 00:51:55 -04:00
16002ddb54 rename some more example folders 2021-06-29 21:48:57 -04:00
9d208c9ebd rename some examples folders 2021-06-29 20:25:18 -04:00
878795e64a bulk rename of remaining USER- packages 2021-06-29 20:12:59 -04:00
1dc25b0e10 rename USER-OMP to OPENMP 2021-06-29 17:48:22 -04:00
c085e55695 rename USER-SMD package to MACHDYN 2021-06-29 17:19:39 -04:00
8bf6805e1d rename USER-LB to LATBOLTZ 2021-06-29 17:07:14 -04:00
dc3efd17d2 rename USER-MEAMC to MEAM and pair style meam/c to meam (keeping meam/c as an alias) 2021-06-29 16:59:05 -04:00
efaec31a84 rename USER-CGDNA and USER-CGSDK to CG-DNA and CG-SDK 2021-06-29 15:28:27 -04:00
7390d8e344 remove bogus folder 2021-06-29 11:31:31 -04:00
4342987043 rename example folders 2021-06-29 11:23:47 -04:00
8f60a54656 update USER-RANN example to run faster and provide reference logs 2021-06-22 12:27:05 -04:00
ddc596170e Merge pull request #2803 from akohlmey/collected-small-changes
Collected small changes
2021-06-21 12:59:16 -04:00
a90a48c038 update ASPHERE box/srd example 2021-06-17 10:35:07 -04:00
5a511c2e92 whitespace 2021-06-17 09:56:14 -04:00
ec0f47642a delete old log files 2021-06-14 11:44:05 -07:00
6a4420ba5c updated log files from the latested run 2021-06-14 11:40:45 -07:00
84d04752d3 update log files. make Si example (much) smaller 2021-06-13 17:40:00 -04:00
e64ec4647a Delete dump.myforce.3 2021-06-09 20:45:06 -07:00
06aa6b737e Delete dump.myforce.2 2021-06-09 20:44:56 -07:00
399de7dbf8 Delete dump.myforce.1 2021-06-09 20:44:45 -07:00
b4e9e99067 Delete dump.myforce.0 2021-06-09 20:44:32 -07:00
72ae091aa6 Merge remote-tracking branch 'upstream/master' into mliap_so3_ver2
To have a fetch
2021-06-09 20:31:46 -07:00