Commit Graph

17654 Commits

Author SHA1 Message Date
8ec9b6fb64 Memory Use Reduction 2019-02-05 11:49:15 -08:00
d7c2ecadad add support for using utils::sfgets() to pair style airebo and check whether sscanf() was parsing numbers correctly 2019-02-05 17:05:49 +01:00
0eef5ebaa3 add support for using utils::sfgets() to pair style adp 2019-02-05 17:04:54 +01:00
c42b269803 convert several more table styles to use utils::sfgets() 2019-02-05 16:18:55 +01:00
0c4e76ce84 bugfix for fix qeq/reax to make it usable without pair reax/c 2019-02-05 11:55:02 +01:00
7e1f760b72 rename python.h to lmppython.h and correspondingly python.cpp to lmppython.cpp 2019-02-04 14:24:53 -05:00
e00757e108 support utils:sfgets() 2019-02-04 14:23:29 -05:00
9fcd69921f Commit JT 020419
- neb/spin implemneted
- rotational initial states to be implemented
- climbing image to be implemented
2019-02-04 11:27:00 -07:00
9915a6725f Commit JT 020419
- correct in magelec (if ii<n)
- check correct, apply it to other pairs
2019-02-04 17:21:59 +01:00
b9d8b5f501 lib extension for Mac Os X 2019-02-04 09:23:29 +01:00
d677335b23 Merge remote-tracking branch 'lammps/master' into kim-v2-update 2019-02-03 12:45:44 -06:00
a9b0fb9e9d Some adjustments to kim Install.py 2019-02-03 12:43:48 -06:00
5c3e3f381b added a groupmap 2019-02-03 09:13:37 -08:00
b417cfda9b removed dead code and reduce compiler warnings about unused parameters 2019-02-03 11:36:41 -05:00
7c2a61ad4c Define lib_ext 2019-02-02 17:55:09 +01:00
a8aeba78f3 change write_coeff to use utils:sfgets() 2019-02-02 10:20:49 -05:00
562bc4e584 Update install.py 2019-02-02 13:05:26 +01:00
adebe90315 Optimized Dynamical Matrix 2019-02-01 21:55:29 -08:00
682b456aae Optimized (but not working) Dynamical Matrix command) 2019-02-01 16:18:17 -08:00
64834e4a3d Update Kokkos library 2019-02-01 12:45:54 -07:00
d6eaf73db1 Merge pull request #1307 from akohlmey/next-patch-release
Patch release 1 February 2019
patch_1Feb2019
2019-02-01 20:22:18 +01:00
2b5073fb90 Merge pull request #1311 from akohlmey/correct-delete-callback
Correct calls to atom->delete_callback()
2019-02-01 17:25:25 +01:00
989496d26c use utils::sfgets() where the return status of fgets() is not checked 2019-02-01 12:23:06 +01:00
a401998ede correct sfgets() API to use const char for preprocessor string. whitespace cleanup 2019-02-01 12:23:06 +01:00
0fe5b6c34c apply cfvarg() function to compute reduce 2019-02-01 12:23:06 +01:00
a0699027f7 fix typo 2019-02-01 12:23:06 +01:00
37821f4fa4 more specific style matching for kspace 2019-02-01 12:23:06 +01:00
bb36e6e3c8 implement some examples for using the utils::strmatch() function and use it for inexact Force::pair_match() 2019-02-01 12:23:06 +01:00
7fcc76f071 implement the first three convenience utility functions 2019-02-01 12:23:06 +01:00
f2a977884c Merge pull request #1290 from akohlmey/python-script-portability
Use argparse module in for Install.py scripts in lib and further portability and consistency enhancements. Some lint removal as well.
2019-02-01 01:18:40 +01:00
bc2eeaf22a remove extraneous atom->delete_callback() 2019-01-31 19:10:14 -05:00
5c927d484e add missing atom->delete_callback() 2019-01-31 19:09:59 -05:00
8ee1fefe19 add pointer to README and Manual to help. 2019-01-31 18:46:43 -05:00
763dda64af update lib/gpu/README to current state 2019-01-31 18:45:17 -05:00
a9f8b17cbd Merge pull request #1282 from akohlmey/collected-small-changes
Collected small changes and bugfixes for the next patch release
2019-02-01 00:24:15 +01:00
f28ab59695 output bounding box info for regions, if present 2019-01-31 18:12:56 -05:00
2e60e461a0 must convert regions bounding box to lattice coordinates before checking to reduce lattice creation range 2019-01-31 18:12:37 -05:00
d6a918f4fd Merge pull request #1270 from akohlmey/get-moltemplate-from-web
Replace bundled moltemplate distribution with installation instructions only
2019-01-31 22:58:31 +01:00
7606529f03 Merge pull request #1302 from akohlmey/combined-user-fep-soft-updates
Combined USER-FEP related updates
2019-01-31 22:57:51 +01:00
cdb07f9f06 Merge pull request #1310 from akohlmey/reaxc-with-qeq-shielded
Support using fix qeq/shielded with pair style reax/c
2019-01-31 22:57:31 +01:00
0cce3387bb Merge pull request #1285 from Adrian-Diaz/4D-grow-memory
Added 4D memory grow routine
2019-01-31 17:32:45 +01:00
a93d8dda3c add example input and logfiles for using fix qeq/shielded with pair style reax/c 2019-01-31 14:14:29 +01:00
327ca344ff make fix qeq/shielded fully compatible with pair style reax/c as a replacement for fix qeq/reax 2019-01-31 13:49:05 +01:00
c5256624e8 document coul/streitz and reax/c keywords to extract qeq parameters from pair styles 2019-01-31 13:48:06 +01:00
ae6fb92478 whitespace cleanup 2019-01-31 12:02:43 +01:00
14ab0ec459 remove references to pre-installed packages as this was changed with the 22 August 2018 version 2019-01-31 12:02:22 +01:00
8338969af5 bugfix for create_atoms region optimization 2019-01-31 11:46:03 +01:00
ef5c327f74 Merge branch 'master' into collected-small-changes 2019-01-31 11:45:15 +01:00
06d5c1d62f Merge pull request #1279 from akohlmey/create-atoms-bounding-box
Optimize performance of create_atoms for large boxes and small regions
2019-01-31 09:39:55 +01:00
0e1c6082b0 Merge pull request #1309 from PabloPiaggi/pair_entropy
compute entropy/atom - enhancement/optimization
2019-01-31 09:36:44 +01:00