Commit Graph

17654 Commits

Author SHA1 Message Date
1dbdadcf89 Add files via upload 2019-01-14 09:53:10 +01:00
7a4b6526de Create in.deletion 2019-01-14 09:52:28 +01:00
16b8c94aae Add files via upload 2019-01-14 09:49:37 +01:00
62b4c69360 Create in.insertion 2019-01-14 09:48:40 +01:00
261122d59c Update README 2019-01-14 09:43:13 +01:00
a5ce656c32 Merge pull request #1288 from jrgissing/bond/react-limit-total-number-of-reactions
Bond/react: limit number of reactions, bugfixes
2019-01-13 10:26:06 -05:00
b0af54ac37 bond/react:limit reaction occurrences 2019-01-13 00:07:03 -07:00
4ec21e1b31 Merge pull request #40 from lammps/master
rebase
2019-01-12 23:28:09 -07:00
a3b45d789a correct local/aligned storage issue in airebo/intel macros for vecorization 2019-01-11 10:08:06 -05:00
29dcdec875 Separated templated pair granular from pair granular/multi 2019-01-10 16:53:50 -07:00
15b475690c fix memory leak in fix bond/react 2019-01-10 17:09:30 -05:00
cf00346db4 detect when something tries to delete a callback that was never added 2019-01-10 16:52:40 -05:00
4155b88468 fix 2 bugs in fix bond/react
- correct logic when deleting internal fix
- remove line attempting to dele a callback to Atom(), that was never added
2019-01-10 16:51:30 -05:00
bedbf408f7 use per-target unique temporary name to avoid corruption when creating lmpinstalledpkgs.h from concurrent builds 2019-01-10 16:50:00 -05:00
6f8c544a7d add option to print_var_error() function to delegate errors to error->one() instead of error->all()
this change is applied to cases that may happen on individual ranks only, e.g. out-of-range access, division by zero, invalid argument.
2019-01-10 16:50:00 -05:00
6fbd0c08cc if we want to check for C++ includes, we should now check for cmath not math.h 2019-01-10 16:50:00 -05:00
3cbf009ce6 Merge pull request #1286 from jrgissing/bond_react-memory_correction
Bond/react: memory correction
2019-01-10 07:09:45 -05:00
48cbfc2b1b Update README 2019-01-10 09:09:09 +01:00
8387b2953b bond_react:correctly delete internally-created fixes 2019-01-09 23:14:24 -07:00
e82999ecb4 Merge pull request #39 from lammps/master
rebase
2019-01-09 22:17:33 -07:00
4377662a1e Added 4D memory grow routine
Added a 4D memory grow routine that will be required in possible future patches.
2019-01-09 17:28:42 -05:00
31a712b510 Update Install.sh
Addition of the six files for the class 2 potentials in the end of Install.sh
2019-01-09 09:50:32 +01:00
57df2d81e4 files for soft lj/class2 potentials
the source code for the three soft core class2 potentials
2019-01-09 09:24:12 +01:00
18f8f68e67 Fixed several input parsing issues in pair granular; fixed issue with JKR hysteresis and damping with JKR 2019-01-08 16:33:24 -07:00
e572235ecf optimize create_atoms performance for large boxes and small regions. warn if taking a long time 2019-01-08 14:33:07 -05:00
7a2d326103 Commit JT 010819
- commit before co
2019-01-08 09:19:49 -07:00
faa716e348 Added PairGranular::single method 2019-01-07 16:27:04 -07:00
60693a5f8a Change Kokkos SNAP energy shared arrays from thread to team 2019-01-07 16:26:16 -07:00
61c36dd768 Merge pull request #1277 from stanmoore1/kk_reax_bugfix
Fix memory issue in Kokkos Reax
2019-01-07 14:36:22 -05:00
7fe7dd95d0 Fix memory issue in pair_reaxc_kokkos 2019-01-07 12:09:36 -07:00
06f9933c55 Merge pull request #1276 from akohlmey/rename-lebedva-sources
Rename pair style lebedeva/z sources
2019-01-07 11:32:54 -05:00
3d374aa8b3 Merge branch 'master' into kk_snap 2019-01-07 08:44:36 -07:00
98e0d6eab2 rename sources for pair style lebedeva to be consistent with style name 2019-01-06 21:42:08 -05:00
5ec9623294 Merge pull request #1274 from lammps/rerun-doc
add parallel dump file info to rerun doc page
2019-01-06 21:36:56 -05:00
43edcf4c02 Merge pull request #1275 from jrgissing/bond/react-check-template-topology-overflow
Bond/react: check for molecule template topology overflow
2019-01-06 21:36:13 -05:00
9ae84bc367 bond/react: check template for topology overflow 2019-01-06 17:07:35 -07:00
ca6c1c4b41 Merge pull request #38 from lammps/master
rebase
2019-01-06 16:58:33 -07:00
0cc9a445e8 add parallel dump file info to rerun doc page 2019-01-04 17:09:11 -07:00
dced4c1fca More changes, fixed indentation issues 2019-01-04 17:03:31 -07:00
c26b2078ee Merge pull request #1271 from akohlmey/next-patch-release
Patch release 4 January 2019
patch_4Jan2019
2019-01-03 22:28:55 -05:00
856c325ac4 Merge pull request #1273 from akohlmey/rename-lebedeva
Rename pair style lebedeva to lebedeva/z
2019-01-03 19:43:08 -05:00
7323179de3 rename pair style lebedeva to lebedeva/z to be consistent with kolmolgorov/crespi/z 2019-01-03 17:30:16 -05:00
19e12aada5 Patch release 4 January 2019 2019-01-03 13:44:18 -05:00
abcba913ab Merge pull request #1242 from akohlmey/collected-post-stable-patches
Collected post stable patches
2019-01-03 13:20:28 -05:00
f96f98241c replace outdated moltemplate distribution with README explaining how to install the latest version 2019-01-03 00:39:58 -05:00
41ccf832bf update log files 2018-12-30 04:30:58 -05:00
6d5ab3dac1 Merge branch 'github-rebo-bugfix' of https://github.com/CF17/lammps into test-rebo
# Conflicts:
#	examples/airebo/log.23Jun17.airebo-m.g++.1
#	examples/airebo/log.23Jun17.airebo-m.g++.4
#	examples/airebo/log.23Jun17.airebo.g++.1
#	examples/airebo/log.23Jun17.airebo.g++.4
#	examples/airebo/log.27Nov18.airebo-m.g++.1
#	examples/airebo/log.27Nov18.airebo-m.g++.4
#	examples/airebo/log.27Nov18.airebo.g++.1
#	examples/airebo/log.27Nov18.airebo.g++.4
#	examples/airebo/log.29Jun18.airebo-m.g++.1
#	examples/airebo/log.29Jun18.airebo-m.g++.4
#	examples/airebo/log.29Jun18.airebo.g++.1
#	examples/airebo/log.29Jun18.airebo.g++.4
2018-12-30 03:44:38 -05:00
fd18660463 Merge branch 'collected-small-changes' into collected-post-stable-patches 2018-12-29 17:08:32 -05:00
1991ff6c48 consistent formatting: replace "if( XXX)" with "if (XXX)" 2018-12-29 17:08:12 -05:00
f25bfd5931 consistent formatting: replace "if( XXX )" with "if (XXX)" 2018-12-29 17:04:28 -05:00