c9ae41246d
Ran the four make commands in the src folder: make fix-whitespace; make fix-homepage; make fix-errordocs; make fix-permissions
2023-01-15 16:05:36 -06:00
959b9c220f
Cleaned up unused member functions and hd_balancer calls
2022-11-07 15:49:37 -06:00
a3cc0e8432
Reverted the block size tuning, which caused bugs for low atom counts (will revisit later)
2022-11-04 13:45:59 -05:00
00f46120c7
Removed max_cus() from Device, used device->gpu->cus() instead
2022-10-07 15:50:30 -05:00
6b9e83fe20
Added timing for the induced dipole spreading part, computed the block size to ensure all the CUs are occupied by the fphi_uind and fphi_mpole kernels
2022-10-06 15:03:58 -05:00
2ef6a59c0a
Merge branch 'develop' into amoeba-gpu
2022-10-01 00:38:24 -05:00
9a1f23a079
Cosmetic changes and cleanup
2022-09-30 17:32:25 -05:00
1d75ca3b20
Moved precompute() out of the terms in amoeba and hippo, to be involed in the first term in a time step: multipole for amoeba and repulsion for hippo
2022-09-30 16:31:13 -05:00
e6d2582642
Updated fphi_mpole, renamed precompute_induce to precompute_kspace
2022-09-28 15:08:18 -05:00
785131932c
Added fphi_mpole in amoeba/gpu, fixed a bug in the kernel when indexing grid
2022-09-20 13:58:17 -05:00
caa66d904e
Cleaned up GPU lib functions
2022-09-18 15:54:12 -05:00
f9f777b099
Refactored precompute_induce to overlap data transfers with kernel launches
2022-09-18 15:09:26 -05:00
62ecf98cda
Enabled fphi_uind in hippo/gpu, really need to refactor hippo and amoeba in the GPU lib to remove kernel duplicates
2022-09-16 14:47:16 -05:00
880f20c285
Cleaned up kernels
2022-09-15 15:29:14 -05:00
9c4d3db558
Cleaned up and converted arrays to ucl_vector of numtyp4
2022-09-13 16:48:39 -05:00
31047b4a31
Removed mem alloc in precompute_induce, used buffer for packing, and switched to using ucl_vector
2022-09-13 12:53:48 -05:00
7f4efa380a
Re-arranged memory allocation for cgrid_brick, some issues need to be fixed
2022-09-11 18:58:34 -05:00
c58343b2e2
Cleaned up debugging stuffs, need more refactoring and add to hippo
2022-09-09 13:50:41 -05:00
b72b71837e
Moved first_induce_iteration in induce() to the right place
2022-09-09 13:34:57 -05:00
4b8caac727
Made some progress with fphi_uind in the gpu pair style
2022-09-09 12:14:36 -05:00
a0af9627e5
Fixed memory bugs with device array allocations
2022-09-06 16:19:17 -05:00
21b7fb2fcf
Exposing fphi_uind to the gpu pair style, still keeping the part not ready though
2022-09-02 14:55:20 -05:00
cad7e1b364
Moved fphi_uind up to BaseAmoeba
2022-09-02 10:18:59 -05:00
aac264f2e2
Working on the fphi_uind kernel and array allocations
2022-08-30 23:40:04 -05:00
c5c3c697df
Adding fphi_uind kernel, working on the arrays allocation
2022-08-29 00:13:30 -05:00
9e7bbad4d4
Working on fphi_uind in the GPU lib
2022-08-27 13:19:52 -05:00
b160460dcc
Added preprocessors to comment out cufft entirely for now
2022-08-26 12:55:46 -05:00
f4a90c62c0
First attempt to port the forward FFT in the k-space induce term to the GPU, not working yet
2022-08-23 15:42:05 -05:00
28dabb9687
Cleaned up unused variables in the amoeba kernels, made room for convolution gpu
2022-08-16 15:37:49 -05:00
46b8b00a4f
Working on fft on the device
2022-08-15 15:51:43 -05:00
538aa13693
Only transfer data that is needed for umutual2b; allowed convolution and kspace term umutual1 to be overridden by the gpu counterparts
2022-08-10 16:21:30 -05:00
66ee2bf989
Cleaned up
2022-07-14 11:01:30 -05:00
0c44bd1086
Rearranged the order of real-space and kspace part of ufield0c(), delayed device-host transfer from umutual2b() to overlap with kspace part
2022-07-08 14:45:31 -05:00
79fbbd4f33
Cleaned up the API of amoeba and hippo to remove unncessary arguments
2021-10-04 14:40:58 -05:00
5a6426bf96
Only transfer data arrays that are needed in each kernel
2021-10-02 00:56:15 -05:00
f4d3d3a2b5
Gradually cleaned up and removed redundancy in amoeba and hippo
2021-10-02 00:09:53 -05:00
f126f785a4
Removed duplicates in the amoeba kernels
2021-10-01 10:19:17 -05:00
3328ac0df2
Attempted to remove some redundancy in data transfers in the amoeba kernels; keeping HIPPO independent of AMOEBA for now
2021-10-01 09:58:21 -05:00
01381b7f54
Fixed bugs in the repulsion kernel, now working correctly with the double precision mode
2021-09-29 11:57:25 -05:00
6286a119b3
Removed precompute() in hippo
2021-09-28 23:12:07 -05:00
98a2b67292
Changed to the API of BaseAmoeba to reduce duplicates in hippo
2021-09-28 17:39:55 -05:00
b874feb127
Removed trailing spaces
2021-09-28 17:28:33 -05:00
f8bc091cb8
Kept working on the multipole real-space term of hippo
2021-09-25 13:17:06 -05:00
78ef0d631f
Working on the multipole real-space term of hippo
2021-09-25 12:25:34 -05:00
d77d5b7f0a
Added classes for hippo/gpu, refactored BaseAmoeba and made room for the dispersion real-space term in hippo
2021-09-21 15:40:06 -05:00
a2fd784034
Added the dispersion real space term, which is for HIPPO.
2021-09-21 10:55:38 -05:00
42034bd1c9
Fixed bugs for undefined tagint and ucl_powr ambiguity in kernels for OpenCL builds
2021-09-20 12:48:29 -05:00
5d801e985f
More cleanup
2021-09-17 23:24:23 -05:00
f5713a52b3
Added another kernel to accumulate forces, energies and virial on the device (similar to the tersoff kernels) as multiple kernels all added to those quantities; also only copy answers back to the host in the last kernel in a time step; cleaned up debugging messages
2021-09-17 16:39:57 -05:00
2e6df83b9b
Fixed bugs in the multipole real-space part on the GPU; separately multipole real and polar real work correctly (along with udirect2b and umutual2b), but
...
together they are conflicting due to the use of ans to copy forces back from device to host. The other 2 kernels (induce part) do not touch forces and energies.
2021-09-17 15:24:36 -05:00
