Commit Graph

698 Commits

Author SHA1 Message Date
30d15b9b22 test for extract parameters in unit tests 2021-02-28 11:59:17 -05:00
1521c7a370 Merge pull request #2625 from yafshar/kim_citation
Updating the kim citation report to lammps conventions
2021-02-26 20:38:28 -05:00
2ab9c34e52 Merge pull request #2631 from rbberger/python_additions
Add LAMMPS output readers to Python package
2021-02-26 20:27:52 -05:00
e88c124da6 add extra cases for query unit test 2021-02-26 12:47:43 -06:00
aea0ceac03 Merge pull request #2632 from akohlmey/utils-regex-update
Add new utils::strfind() function and update mini-regex code
2021-02-26 10:50:34 -05:00
cfc86f7a2d add unit tests for new utils::strfind() function 2021-02-25 23:05:48 -05:00
f92089298d Fix bug in AvgChunkReader and add docs 2021-02-25 16:56:19 -05:00
69245cb294 add unit tests for citeme class crc32 checks of unique citations 2021-02-25 15:52:38 -05:00
977ba9ff66 Add LogFile and AvgChunkFile readers
Implements changes proposed in #144
2021-02-25 15:32:53 -05:00
03559dfe21 add tests for dihedral and improper style hybrid 2021-02-24 20:51:05 -05:00
a0a865643e add missing coefficiencts to data file. no more need to set afterwards 2021-02-24 20:42:25 -05:00
2d1dcc95a6 update refrence data for impropers 2021-02-24 19:49:42 -05:00
a910c08b57 correct input 2021-02-24 19:39:14 -05:00
9fbec51ac6 update reference data 2021-02-24 19:34:39 -05:00
bd7c37d539 CHARMM dihedral styles require a matching pair style. add code for that. 2021-02-24 19:34:15 -05:00
cf9255a90d avoid problems testing dihedrals and impropers 2021-02-24 18:37:58 -05:00
d81ca27e96 align tester sources with current state of other testers 2021-02-24 17:31:09 -05:00
c45658f1c7 Merge branch 'master' into improper-tester 2021-02-24 17:08:34 -05:00
6ecbcc277b update death tests for removed commands 2021-02-23 09:59:24 -05:00
293ebad98f Merge branch 'master' into kim_commands 2021-02-23 09:34:32 -05:00
5c00162367 Adding extra cases for 'kim query command' 2021-02-23 06:12:09 -06:00
ad93c64fa6 update the kim command unittests to match with the new kim param interface 2021-02-23 06:12:08 -06:00
29926c4f71 update kim command unittests with extra test cases for kim param command 2021-02-23 06:12:07 -06:00
1f109b0db2 update unittest for lammps_config_has_mpi() change 2021-02-17 15:50:45 -05:00
0c34810518 lmp.mpi4py will always be false if LAMMPS has been compiled without MPI support 2021-02-17 15:29:33 -05:00
db841dd412 correct return value when no packages are installed 2021-02-17 15:28:44 -05:00
90e748aa5c Update the 'kim query' unittest
Update the unittest with the latest extension.
Replace the discontinued model of
`EAM_Dynamo_Mendelev_2007_Zr__MO_848899341753_000`
and replace it with the identical version,
`EAM_Dynamo_MendelevAckland_2007v3_Zr__MO_004835508849_000`
2021-02-12 08:03:32 -06:00
6769ded03c update the unittests with the latest interface changes 2021-02-12 06:16:34 -06:00
01a05b88b4 avoid memory leak in unit test fixture 2021-02-08 10:43:18 -05:00
c810cda64c must free MPI communicators created by MPI_Comm_split() 2021-02-08 10:40:20 -05:00
0f07215a2b add utils::strdup() convenience function 2021-02-04 17:00:02 -05:00
49ea762300 Merge pull request #2571 from akohlmey/arg-info-class
Add ArgInfo class for simpler processing of compute, fix, and variable references
2021-02-04 14:32:34 -05:00
5256631bee test for correctly supporting the use of multiple calls to pair_style kim 2021-02-04 11:28:38 -06:00
c2c8c5e493 Merge remote-tracking branch 'github/master' into arg-info-class
# Conflicts:
#	src/compute_chunk_atom.cpp
#	src/compute_chunk_spread_atom.cpp
#	src/compute_reduce.cpp
#	src/compute_reduce_region.cpp
#	src/compute_slice.cpp
#	src/fix_ave_atom.cpp
2021-02-02 11:33:01 -05:00
fae6fef1ac add tests for DNAME/INAME argument references 2021-02-01 09:39:13 -05:00
2882208e0b must report index1 as 0 for type == ArgInfo::NONE 2021-01-31 22:05:33 -05:00
c1742aa3d1 add unit tests for ArgInfo class 2021-01-30 00:50:15 -05:00
065c4939ed relax some unit test epsilons, so the tests pass on MacOS 2021-01-29 18:48:05 -05:00
95b445a25a must initialized has_exceptions to avoid false positives in unit tests 2021-01-29 18:38:33 -05:00
222d842b45 Merge pull request #2435 from sramirezh/adding_new_pair
Adding new Wang-Frenkel potential pair style
2021-01-29 16:22:39 -05:00
759ac0ddd9 Merge pull request #2564 from akohlmey/detect-utf8-multibytes
Detect UTF-8 multibyte characters input and replace with ASCII equivalents where known
2021-01-29 13:02:34 -05:00
8260fbd344 add unit test for wf/cut pair style 2021-01-28 03:48:39 -05:00
72168d6780 add utility functions to detect UTF-8 characters and substitute with ASCII equivalents 2021-01-25 01:41:38 -05:00
d49f021c8b silence compiler warnings 2021-01-18 14:40:23 -05:00
a2d7d47cac add unittest for python interface of accelerator config introspection 2021-01-16 17:12:29 -05:00
5e6411ea5a Merge pull request #2514 from oywg11/tersoff-shift
Add a shift option to most Tersoff potential variants
2021-01-15 13:59:56 -05:00
59ef2e17ea add eam/he pair style to distribution 2021-01-13 22:24:44 -05:00
cbca189490 Merge branch 'master' into tersoff-shift 2021-01-11 04:30:11 -05:00
412d1c1b72 rebless unit test data for tersoff shift bugfix 2021-01-11 04:21:23 -05:00
6bdf427522 add unit tests for tersoff pair styles used with shift keyword 2021-01-04 23:13:38 -05:00