Commit Graph

17585 Commits

Author SHA1 Message Date
666fe4cfbe fix two bugs in the ndx2group command 2023-03-16 12:35:53 -04:00
ed7bd50500 must recompile main.o when MDI package is installed/uninstalled 2023-03-12 22:31:06 -04:00
d241e26d03 allow dynamic groups with fix oneway 2023-02-25 12:03:40 -05:00
73e7163ed6 don't store topology information with ghost atoms. they will be ignored. 2023-02-24 22:56:17 -05:00
5a5a86684a Fix the adios2::ADIOS constructor calls that were deprecated in adios 2.8 and removed in 2.9. The fix is backward compatible with older adios2 versions as well. 2023-02-23 15:39:01 -05:00
ae3f57e89a fix bug in fix wall/morse that was computing forces incorrectly 2023-02-23 15:38:20 -05:00
ce10614cab backport region check move to init() function for fix gcmc and fix widom 2023-02-17 12:44:58 -05:00
facbeac052 move definition of MAXBIGINT_DOUBLE to variable.cpp 2023-02-17 12:29:17 -05:00
188ee5af15 use MAXBIGINT_DOUBLE which does not overflow when casting back to bigint 2023-02-12 04:08:11 -05:00
f176b8b14c consistently support special_bonds settings in pair style gauss 2023-02-10 05:09:58 -05:00
fd046c8fd8 Merge branch 'maintenance' into maintenance-2022-06-23 2023-02-09 20:17:06 -05:00
b7d316031d nullify freed pointers in list of dump data 2023-02-03 20:39:47 -05:00
361e9f3ea5 avoid illegal memory access in destructor after variables have been deleted 2023-02-03 20:26:42 -05:00
28120793b8 backport PR #3631 2023-02-02 22:21:15 -05:00
b4d4dcbcbc simplify 2023-01-31 20:35:18 -05:00
0ee3d9da5d port triclinic region vs box check from fix gcmc to fix widom 2023-01-31 20:29:18 -05:00
50afb292b0 compare region extent with box bounds for triclinic 2023-01-31 20:28:25 -05:00
979119a29b backport fixes to KOKKOS and REAXFF from PR #3621 2023-01-31 20:18:38 -05:00
bc66572275 Fix out of bounds access in pair_vashishta_kokkos with skip list 2023-01-31 20:00:45 -05:00
609231675f Allow neighbor class to set newton flag in Kokkos neigh list 2023-01-31 19:55:07 -05:00
ade0718c11 make compatible to non-glibc Linux 2023-01-27 07:26:23 -05:00
31033ff6e0 must initialize "np" in constructor 2023-01-26 18:34:21 -05:00
9a598ba5a8 backport fix pimd bugfix from develop 2023-01-26 15:59:26 -05:00
af5229ba58 swap constexpr back to const 2023-01-26 09:58:26 -05:00
b180200c48 check if variable value is a valid number before converting it 2023-01-26 07:10:50 -05:00
015fa4cb0a update embedded docs 2023-01-25 21:44:04 -05:00
e163b0b1d7 portability improvements for Solaris/OpenIndiana 2023-01-25 21:40:23 -05:00
6b6a47bd3c Small tweaks 2023-01-25 21:21:08 -05:00
4a0a98a0fd Small bugfixes for Kokkos 2023-01-25 21:20:59 -05:00
369ea4fd26 Add this 2023-01-25 21:17:30 -05:00
d63c002bf5 Use group for Kokkos nvt temp compute 2023-01-25 21:17:22 -05:00
ccef293161 remove obsolete comment 2023-01-11 22:11:53 -05:00
4b0de87813 silence compiler warning 2023-01-11 21:59:35 -05:00
fa22aef31b Fix obscure bug in Kokkos neigh list build 2023-01-11 21:53:16 -05:00
cb7544a615 import modernization from upstream 2023-01-11 21:41:58 -05:00
a9be4906b7 import safer ghost cutoff determination for manybody GPU styles from upstream 2023-01-11 21:41:43 -05:00
f8de1b1a75 use official API for utils::logmesg(), stricter/consistent checking for integer and floats 2023-01-11 05:54:35 -05:00
a8d3c43a77 update version 2023-01-11 01:26:35 -05:00
32b020a165 Increase communication cutoff for TIP4P pair styles, if needed
This avoids error of H atom not found when the O atom is a ghost.
2023-01-10 21:55:56 -05:00
c1db230331 Fix bug in Kokkos ReaxFF on GPUs 2023-01-10 21:55:56 -05:00
254c052ecc Fix GPU tag issues in other Kokkos styles 2023-01-10 21:55:56 -05:00
8e889dfa7c offset is not used (by construction of the potential) 2023-01-10 21:55:55 -05:00
5b6a52a646 correct suffix handling with compute fep 2023-01-10 21:55:55 -05:00
55f56deb63 bugfix for minimization with KOKKOS when using fix box/relax 2023-01-10 21:55:55 -05:00
bfe127a720 cosmetic 2023-01-10 21:55:55 -05:00
d95c8911a3 tweak intel compiler settings 2023-01-10 21:55:55 -05:00
0380f9d854 consistently prefix deep_copy() with Kokkos:: 2023-01-10 21:55:55 -05:00
71b1d60363 bugfix for gaussian bond/angle styles to avoid premature truncation of potential 2023-01-10 21:55:55 -05:00
8b1f92fabd better error handling when reading table files 2023-01-10 21:55:55 -05:00
419af0cf28 dead code removal 2023-01-10 21:55:45 -05:00