Commit Graph

19974 Commits

Author SHA1 Message Date
a1188c035b Merge branch 'master' of https://github.com/charlessievers/lammps into fix_numerical_differentiation 2020-03-10 16:14:20 -06:00
7dafec1700 Removed misleading doc information and included errors 2020-03-10 16:12:02 -06:00
b9ff623c16 Merge pull request #1920 from jguenole/fire-debug
fire bug fix to avoid crashes due to lost atoms
2020-03-10 15:08:58 -04:00
7b7ca000b3 Merge pull request #1922 from weinbe2/snap-scratch
SNAP optimizations - hierarchical parallelism, scratch memory, data layout transformations
2020-03-10 15:07:46 -04:00
9d7b15631d Add contributing author 2020-03-10 09:20:54 -06:00
4e31d622ce Whitespace and comment cleanup 2020-03-10 09:11:29 -06:00
903e33d86e Added atom map into example, enforce atom map added to fix_numdiff, added error statement to fix_numdiff.h 2020-03-09 10:33:04 -06:00
3be6347ad4 Merge pull request #1924 from akohlmey/rename-user-meso
Rename USER-MESO package to USER-MESODPD
2020-03-09 10:53:22 -04:00
740717d114 add false positives 2020-03-09 10:00:14 -04:00
a6086c279b rename USER-MESO package to USER-MESODPD and update related files and folders 2020-03-09 09:48:49 -04:00
ddc36973f0 final reference info 2020-03-06 14:55:52 +01:00
bc8fa088be Merge pull request #1822 from jrgissing/bond/react-new-examples-and-package
Bond/react: new examples and repackage
2020-03-05 22:49:53 -05:00
21f2ec3a25 Merge branch 'master' into bond/react-new-examples-and-package 2020-03-05 20:08:19 -07:00
1fb54c307c Merge pull request #1918 from akohlmey/collected-small-fixes
Collected small fixes for the next patch
2020-03-05 15:16:50 -05:00
54a37aa4ef fix spelling issue 2020-03-05 14:43:22 -05:00
0fba0b1bc1 handle empty build type 2020-03-05 14:39:40 -05:00
5a3a5d86d4 reduce compiler warnings and avoid clash with KOKKOS 2020-03-05 14:27:33 -05:00
606eaf61f7 Merge branch 'master' into fix_numerical_differentiation 2020-03-05 09:58:50 -07:00
36ec95c2f5 fixed typo in numdiff example input 2020-03-05 09:55:25 -07:00
fb3a8f5bb1 Merge pull request #1909 from giacomofiorin/colvars-update
Update Colvars to version 2020-02-27
2020-03-05 10:18:01 -05:00
b0c6641f1b tweak compiler flags for Intel and GNU 2020-03-05 10:16:38 -05:00
1642bf5afc always skip deprecated C++ MPI interface 2020-03-05 10:16:21 -05:00
2e8aeaef46 remove mentioning external tex files from contribution guide 2020-03-05 09:21:01 -05:00
d0160cc208 Merge pull request #1915 from akohlmey/cpp-11-cmake-3.10
Require C++11 and CMake 3.10
2020-03-05 09:14:46 -05:00
1ee67c20d9 comments 2020-03-05 11:57:01 +01:00
ca89c460bf remove space 2020-03-05 11:49:02 +01:00
022dd4a4e4 special v evaluation to limite dtv each time v is zeroed 2020-03-05 11:39:48 +01:00
27fdbfa8a1 minor modification of halfstepback with correct dt 2020-03-05 10:49:39 +01:00
ae045e4445 indented note block in fix_num_diff.rst 2020-03-04 19:48:12 -07:00
02bdccbae1 added yyy to false positives 2020-03-04 19:45:13 -07:00
be138d368e Merge branch 'master' into fix_numerical_differentiation 2020-03-04 19:11:39 -07:00
968f44601c Updated doc page with delta info and simplified example 2020-03-04 19:08:57 -07:00
6786efa224 Merge commit 'refs/pull/1916/head' of github.com:lammps/lammps into collected-small-fixes 2020-03-04 17:04:45 -05:00
14d17b3513 clean the superfluous newline
I believe this newline in the document is superfluous.
2020-03-04 16:41:27 -05:00
ec87a51a61 put C++11 compliance check into CMake 2020-03-04 14:52:38 -05:00
7bbf070757 document new C++ and CMake requirements in manual 2020-03-04 14:37:51 -05:00
ab51ae854e require C++11 to compile LAMMPS 2020-03-04 14:28:47 -05:00
a972850b39 require CMake version 3.10. remove tests for older versions. 2020-03-04 14:28:33 -05:00
e9544218e6 some corrections to the building the manual documentation 2020-03-04 14:14:12 -05:00
3ca93f10b3 don't run atof() on a NULL pointer in case a potential file has an empty line 2020-03-04 14:00:52 -05:00
cd61cfe8c7 SNAP optimizations, taking advantage of improved data layouts, scratch memory, and hierarchical parallelism. 2020-03-03 13:02:04 -05:00
6354777d09 Merge pull request #1914 from akohlmey/next_lammps_version
Step version string for next patch and stable version
patch_3Mar2020 stable_3Mar2020
2020-03-03 10:27:12 -05:00
3eeb7547b5 step version string for next patch and stable version 2020-03-03 07:25:18 -05:00
c5ee78ca1d Merge pull request #1910 from akohlmey/documentation-fixes
Some more conversions and corrections for the LAMMPS manual
2020-03-03 06:25:44 -05:00
7d598ba8d7 synchronize list of hardware architectures supported by KOKKOS with list in cmake file 2020-03-03 03:33:23 -05:00
7f84de17bd Merge pull request #1912 from migueldiascosta/epyc_kokkos_arch
add EPYC to KOKKOS_ARCH_LIST
2020-03-03 03:32:03 -05:00
a4a5d24a69 add link to github support for subversion clients 2020-03-03 03:19:25 -05:00
0723bf3db7 setup issues with fix numdiff 2020-03-02 13:32:05 -07:00
8f608f6a35 lo-level -> low-level 2020-03-01 10:30:06 -05:00
ff614957c6 encode some more mathematical expressions and symbols 2020-03-01 09:25:20 -05:00