Commit Graph

197 Commits

Author SHA1 Message Date
a193d9d429 fix several issues when using extract_global() from python exposed by tests 2021-03-25 20:34:25 -04:00
b8f02d759a add support for extracting respa levels and timestep values 2021-03-25 20:34:25 -04:00
a76a8eae59 fix segfault when processing empty lines 2021-03-16 23:41:18 -04:00
42895ac6df Merge pull request #2654 from akohlmey/collected-small-changes
Collected small changes
2021-03-16 19:34:54 -04:00
1ef1a7d865 simplify using std::string 2021-03-16 09:39:28 -04:00
5f3649ed95 correctly process strings with DOS-style CR-LF in lammps_commands_string() 2021-03-13 15:48:22 -05:00
742eebec2d support checking the size of MPI communicators and fail if LAMMPS and mpi4py have a mismatch 2021-02-16 20:22:18 -05:00
a700e506ae use utils::strmatch(name,"^x_") instead of (strstr(name,"x_") == name) 2021-02-03 16:50:19 -05:00
1cdce9233e identify offloading to Xeon Phi accelerator coprocessors 2021-01-16 01:07:44 -05:00
3d3590f02d add c-library interface and export to python 2021-01-12 20:10:47 -05:00
51a20175c9 more code formatting consistency changes for loops and conditionals 2020-12-30 09:47:45 -05:00
382ade15fe more consistent formatting of for/while loops and if statements 2020-12-30 09:09:08 -05:00
849e5ffee2 add option to extract newton_bond/newton_pair settings 2020-11-25 16:51:37 -05:00
2d69051cdf add documentation for sublo/subhi extracted flags. add corresponding entries to get data type. 2020-11-19 19:24:36 -05:00
c7247aaaaf provide access to universe and world size and rank information. and number of OpenMP threads 2020-11-19 13:49:10 -05:00
3d7fd453c3 allow extracting variables that are not atom or equal style compatible 2020-11-19 13:47:23 -05:00
96dece97ef Merge branch 'master' into mpi_tests 2020-11-19 11:22:58 -05:00
d55eeefc32 Undo change in library interface breaking compatibility 2020-11-09 13:47:27 -05:00
c7a10050c2 Merge pull request #2439 from akohlmey/collected-small-changes
Collected small changes for the next release
2020-10-22 17:23:49 -04:00
9bc3ccd49a fix misplaced "#endif" 2020-10-22 15:45:24 -04:00
fcd442d751 simplify code. print warnings only on MPI rank 0. update parameter names 2020-10-22 15:35:45 -04:00
68b533d1b8 correct order of functions 2020-10-22 14:59:55 -04:00
bcf5abccb5 reorder functions in library.h and library.cpp to match order in manual 2020-10-22 12:11:42 -04:00
adf74b3a22 use https://lammps.sandia.gov based URLs consistently 2020-10-21 16:45:30 -04:00
ed885847a3 expose document and test more atom style property flags 2020-10-12 20:24:21 -04:00
a684f896de rearrange doxygen docs for lammps_extract_settings() and lammps_extract_global()
this replaces two large tables whith multiple small tables that group
parameters by similar context
2020-10-12 18:59:35 -04:00
d7201bae33 Add library access to sublo and subhi 2020-10-09 18:01:51 -04:00
57e0e64ffe No MPI communicaton after MPI_Finalize() and no MPI_Finalize() unless we are initialized. 2020-10-09 12:47:13 -04:00
49ebc5ac40 update versionadded date 2020-10-08 22:32:08 -04:00
a581b4b85e Merge pull request #2412 from lammps/progguide-updates
Updates to the Programmer Guide part of the Manual
2020-10-08 21:50:37 -04:00
4f4bc427ae implement LAMMPS_LIB_NO_MPI to LAMMPS_LIB_MPI change 2020-10-08 21:50:15 -04:00
50bfb9142d add library API to print OS/Compiler info (for use with LAMMPS shell) 2020-10-07 18:35:59 -04:00
57cc8d6290 fix incorrectly formatted "notes" 2020-10-07 18:35:05 -04:00
1098ca8749 add some more explanation about exceptions from the library interface perspective 2020-10-07 13:08:49 -04:00
e637c150ba add versionadded tags 2020-10-07 13:08:25 -04:00
355c68f304 Merge branch 'master' into progguide-axel 2020-10-06 21:40:43 -04:00
fb1dab6098 Merge branch 'master' into collected-small-fixes 2020-10-06 18:00:33 -04:00
1ee9e4eabd Merge branch 'master' into progguide-axel 2020-10-06 17:11:47 -04:00
80a054471d Merge branch 'progguide-updates' into progguide-richard 2020-10-05 19:31:03 -04:00
113db3ac73 fold group specific query functions into the more generic ID query functions 2020-10-05 13:41:12 -04:00
9353004e3e add APIs to determine of LAMMPS is running and to interrupt a run cleanly 2020-10-04 11:23:49 -04:00
9dfb715296 add support for variable names to id introspection in library interface 2020-10-04 06:01:26 -04:00
1988e4c24c add introspection for various kinds of IDs 2020-10-03 23:38:02 -04:00
a2f7aae6db add API to query group names 2020-10-03 12:26:17 -04:00
01c85a3032 correct embedded docs 2020-10-03 12:25:56 -04:00
4cf30ceda1 silence compiler warnings 2020-10-03 09:52:00 -04:00
af8f8d3c11 avoid segfault 2020-10-03 09:51:42 -04:00
22cbac0b01 initial version of LAMMPS shell. without build system support (yet). 2020-10-03 09:49:35 -04:00
52c6353f86 Fix typo 2020-10-02 15:09:29 -04:00
a79a7b2704 fix typo reported on lammps-users 2020-09-30 21:24:55 -04:00