Commit Graph

108 Commits

Author SHA1 Message Date
a3c0be875e include-what-you-use updates 2022-12-11 22:46:54 -05:00
248b7383c7 Merge remote-tracking branch 'github/develop' into collected-small-changes
# Conflicts:
#	src/DIPOLE/pair_lj_cut_dipole_long.h
#	src/OPENMP/fix_nvt_sllod_omp.h
#	src/PHONON/fix_phonon.h
#	src/SPIN/pair_spin_dipole_cut.h
#	src/SPIN/pair_spin_dipole_long.h
#	src/STUBS/mpi.h
#	src/UEF/fix_nh_uef.h
#	src/fix_nvt_sllod.h
#	tools/coding_standard/homepage.py
2022-10-24 15:50:50 -04:00
2132b1d904 update developer reference text 2022-10-24 11:08:26 -04:00
cccf3f6f78 change email for contacting LAMMPS developers, add to homepage checker 2022-10-20 20:36:03 -04:00
13b7c41971 support Gatom-step/s as well 2022-10-13 17:33:27 -04:00
3f215087d2 also print atom-step/s performance metric 2022-10-13 16:32:41 -04:00
67f6adebb7 whitespace fixup with dynamic casts 2022-09-10 13:26:38 -04:00
97fab45f7e Merge branch 'develop' into amoeba-ak 2022-05-28 05:24:02 -04:00
df2ecf5bf8 timings, energy, virial tallying 2022-05-18 08:49:31 -06:00
00bb566893 enforce that the number of neighbors cannot be negative (e.g. w/o neighbor list) 2022-05-06 17:45:01 -04:00
200b4f13c7 use dynamic cast instead of c-style cast when casting from base type to derived class 2022-04-10 18:18:06 -04:00
45d246b9c5 Merge branch 'develop' into thermo-refactor-plus-yaml 2022-03-19 21:55:18 -04:00
f5ebfbf90b refactor thermo output processing and add new yaml thermo style 2022-03-19 16:39:09 -04:00
88ac22cd62 silence compiler warnings. avoid uninitialized access. 2022-03-18 20:02:49 -04:00
68673633f0 silence compiler warnings about unused variables 2022-03-18 18:09:24 -04:00
61f5bbd633 update logic to avoid stall with neighbor list statistic during final summary 2022-03-10 05:21:53 -05:00
abd8a6ee15 remove incorrect comment 2022-03-10 01:17:44 -05:00
26c0b9cf87 move calculation of number of neighbors to Neighbor class
this allows reusing the code in the ImbalanceNeigh class
2022-03-09 23:18:28 -05:00
5b40e4cb38 new accessor APIs for fixes and computes in Modify plus a few applications 2021-10-16 06:00:28 -04:00
e29bd3d157 update defines from -DLMP_USER-<PKG> to -DLMP_<PKG> for consistency 2021-08-06 14:07:43 -04:00
09c19a936b update URLs in source code and manual 2021-05-24 14:18:20 -04:00
d1941392d3 disable clang-format for all existing .cpp files (for now) 2021-05-05 23:53:38 -04:00
d2cdb318ab apply new logmesg() overload to a bunch of cases. 2021-04-21 23:38:45 -04:00
552d13b9e4 print message only on MPI rank 0 2021-04-09 21:43:02 -04:00
51a20175c9 more code formatting consistency changes for loops and conditionals 2020-12-30 09:47:45 -05:00
adf74b3a22 use https://lammps.sandia.gov based URLs consistently 2020-10-21 16:45:30 -04:00
429cc0cacf add missing updates for symbolic constants in Atom class 2020-09-16 23:19:10 -04:00
618b08dcfc Merge branch 'master' into symbolic-atom-constants 2020-09-15 14:58:13 -04:00
3655919c7c tweak minimize summary output format 2020-09-14 09:09:22 -04:00
9d0c3bc665 replace some numeric constants in Atom and AtomVec classes with enumerators 2020-09-11 19:07:55 -04:00
390c6ba106 rechecking some corefiles with IWYU after the many updates 2020-09-03 15:28:07 -04:00
f88f4cd60e more include file updates 2020-09-02 21:44:04 -04:00
38d9c0bedf tweak output formatting 2020-07-11 21:44:31 -04:00
74fc64395f output summary simplifications 2020-06-26 10:54:25 -04:00
f56563c747 simplify output handling in Finish class 2020-06-26 08:04:07 -04:00
a1f0c0079d some cleanup for missed steps in previous change sets 2019-07-12 16:37:01 -04:00
7967cb1133 put implementation header first to avoid issues with mpi.h and lmptype.h with OpenMPI 2019-07-03 06:16:16 -04:00
31cbccda85 continue cleaning up include file lists 2019-06-29 09:37:44 -04:00
73fa8d4055 Rename Kokkos variables 2019-06-07 16:30:02 -06:00
37821f4fa4 more specific style matching for kspace 2019-02-01 12:23:06 +01:00
e4071d7f46 replace C-style include files with their C++ equivalents 2018-04-27 18:00:24 -04:00
8bbefb6187 more meaningful output for electron units. fix bug in time unit to fs conversion 2018-03-21 20:12:14 -04:00
836a6d292c whitespace fixes, silence compiler warning about too few format specifiers 2017-09-25 16:31:39 -04:00
49dd9449b8 fix gcmc updates from Aidan, trimming of output for replica commands 2017-04-11 08:35:09 -06:00
1cd4c48ccc new SNAP potential for W 2017-02-21 15:49:21 -07:00
61cff85435 avoid not only division by zero, but also computing variance for short runs with insufficient resolution 2017-01-13 14:35:35 -05:00
aa0b327f7e Merge branch 'bugfix_dividebyzero' of https://github.com/timattox/lammps_USER-DPD into collected-small-bugfixes 2017-01-13 14:26:10 -05:00
78498715b4 Protect from divide by zero in mpi_timings() when printing results.
e.g. If neighbor list(s) are never rebuilt, the Neigh time will be zero.
2017-01-13 13:32:15 -05:00
09af780aa8 remove misleading comments 2017-01-06 21:31:39 -05:00
f6a819580c pair TIP4P bug fix for cutoffs >> box size 2017-01-06 09:57:27 -07:00