Commit Graph

25316 Commits

Author SHA1 Message Date
8e63f1ebf5 detect and abort if inconsistent body data for rounded polygon/polyhedra was provided 2021-02-25 18:26:20 -05:00
37086c391f use std::hash instead of a local crc32 implementation. 2021-02-25 18:15:09 -05:00
f92089298d Fix bug in AvgChunkReader and add docs 2021-02-25 16:56:19 -05:00
69245cb294 add unit tests for citeme class crc32 checks of unique citations 2021-02-25 15:52:38 -05:00
3d96d0a674 Fix wrong group name output in fix ave/chunk 2021-02-25 15:34:29 -05:00
977ba9ff66 Add LogFile and AvgChunkFile readers
Implements changes proposed in #144
2021-02-25 15:32:53 -05:00
0ad39757e2 Cleaning up legacy C-style string processing
Most of the C-style strcmp in the code are replaced with string for
simpler/safer/readable alternatives,
2021-02-25 13:55:24 -06:00
be81376426 use crc32 checksum instead of pointer addresses as unique id for citations 2021-02-25 14:45:17 -05:00
1d2c53b9dd remove redundant function call 2021-02-25 14:14:01 -05:00
4422bfbc7a bond/react: performance improvement 2021-02-25 14:04:56 -05:00
06091a95d2 use a safer utils::strmatch instead of strncmp 2021-02-25 10:11:26 -06:00
3f83adefa5 use a safer utils::strmatch instead of strncmp 2021-02-25 10:00:30 -06:00
9d2408754e use more conventional and thus more familiar way to avoid memory leak 2021-02-25 10:34:39 -05:00
441279d935 don't use custom debug library postfix for libOpenCL.a 2021-02-25 10:30:39 -05:00
42c1e264cb small cleanup in fix gpu 2021-02-25 10:30:26 -05:00
c16064d493 update kim examples log files 2021-02-25 08:23:26 -06:00
7d49773294 updating the kim citation report to lammps conventions 2021-02-25 08:22:36 -06:00
1fc284f3ed Correct fix wall/gran docs 2021-02-25 09:09:00 -05:00
f245467f32 Merge pull request #2290 from abhiShandy/improper-tester
Tester for dihedrals and impropers with their unit-tests
2021-02-25 08:46:53 -05:00
03559dfe21 add tests for dihedral and improper style hybrid 2021-02-24 20:51:05 -05:00
dd0d06e373 fix a few more issues in USER-OMP and update indentation 2021-02-24 20:45:07 -05:00
a0a865643e add missing coefficiencts to data file. no more need to set afterwards 2021-02-24 20:42:25 -05:00
785e1ca9f5 add missing writedata=1 setting in constructor 2021-02-24 20:41:53 -05:00
8f3675344f fix bug not ported to USER-OMP version and adapt code style 2021-02-24 20:18:02 -05:00
09192d63a5 plug another memory leak 2021-02-24 19:56:12 -05:00
2d1dcc95a6 update refrence data for impropers 2021-02-24 19:49:42 -05:00
c401d21c38 update include statements to follow conventions 2021-02-24 19:49:11 -05:00
a910c08b57 correct input 2021-02-24 19:39:14 -05:00
9fbec51ac6 update reference data 2021-02-24 19:34:39 -05:00
bd7c37d539 CHARMM dihedral styles require a matching pair style. add code for that. 2021-02-24 19:34:15 -05:00
4245614c0d plug memory leaks 2021-02-24 19:15:02 -05:00
cf9255a90d avoid problems testing dihedrals and impropers 2021-02-24 18:37:58 -05:00
7efacdc911 correctly handle the case of n=1. clean up some ugliness 2021-02-24 18:37:39 -05:00
d81ca27e96 align tester sources with current state of other testers 2021-02-24 17:31:09 -05:00
c45658f1c7 Merge branch 'master' into improper-tester 2021-02-24 17:08:34 -05:00
e916c5d852 Merge pull request #2599 from weinbe2/snap-launch-bounds
Kokkos SNAP cleanup/optimizations --- templating, Kokkos::LaunchBounds, tuning
2021-02-23 21:53:07 -05:00
d2d6b63820 Merge branch 'master' of https://github.com/lammps/lammps into snap-launch-bounds 2021-02-23 20:55:39 -05:00
358c0a0c04 Merge pull request #2620 from yafshar/kim_commands
Refactor kim commands
2021-02-23 20:31:22 -05:00
de14ece848 Merge pull request #2622 from rbberger/hip_corrections
Correct compilation of GPU package when using HIP
2021-02-23 16:14:17 -05:00
7d1670d91c cuda 11.0 does not support sm_86, it was added in 11.1 2021-02-23 14:23:54 -05:00
70ca055113 Add workaround to compile with HIP, new neighbor code still needs to be ported 2021-02-23 11:28:05 -05:00
2a0b7a26c0 Add missing cq() getter 2021-02-23 11:26:07 -05:00
446a068159 Use hipGetDeviceProperties to avoid int overflows 2021-02-23 10:14:05 -05:00
6ecbcc277b update death tests for removed commands 2021-02-23 09:59:24 -05:00
d44af3256d Fix lal_charmm.cu to support HIP compilation 2021-02-23 09:51:27 -05:00
8c9e9fa9ee add removed commands to Deprecated commands list and processing 2021-02-23 09:36:20 -05:00
293ebad98f Merge branch 'master' into kim_commands 2021-02-23 09:34:32 -05:00
ba1cb4218f update the label to prevent warning on duplicate label 2021-02-23 07:11:43 -06:00
464d9a01c5 apply utils::strdup() in a few more cases 2021-02-23 06:48:45 -06:00
120cdcd7f6 update the kim commands doc 2021-02-23 06:12:11 -06:00