Commit Graph

20177 Commits

Author SHA1 Message Date
1fb54c307c Merge pull request #1918 from akohlmey/collected-small-fixes
Collected small fixes for the next patch
2020-03-05 15:16:50 -05:00
54a37aa4ef fix spelling issue 2020-03-05 14:43:22 -05:00
0fba0b1bc1 handle empty build type 2020-03-05 14:39:40 -05:00
5a3a5d86d4 reduce compiler warnings and avoid clash with KOKKOS 2020-03-05 14:27:33 -05:00
606eaf61f7 Merge branch 'master' into fix_numerical_differentiation 2020-03-05 09:58:50 -07:00
36ec95c2f5 fixed typo in numdiff example input 2020-03-05 09:55:25 -07:00
fb3a8f5bb1 Merge pull request #1909 from giacomofiorin/colvars-update
Update Colvars to version 2020-02-27
2020-03-05 10:18:01 -05:00
b0c6641f1b tweak compiler flags for Intel and GNU 2020-03-05 10:16:38 -05:00
1642bf5afc always skip deprecated C++ MPI interface 2020-03-05 10:16:21 -05:00
2e8aeaef46 remove mentioning external tex files from contribution guide 2020-03-05 09:21:01 -05:00
d0160cc208 Merge pull request #1915 from akohlmey/cpp-11-cmake-3.10
Require C++11 and CMake 3.10
2020-03-05 09:14:46 -05:00
1ee67c20d9 comments 2020-03-05 11:57:01 +01:00
ca89c460bf remove space 2020-03-05 11:49:02 +01:00
022dd4a4e4 special v evaluation to limite dtv each time v is zeroed 2020-03-05 11:39:48 +01:00
27fdbfa8a1 minor modification of halfstepback with correct dt 2020-03-05 10:49:39 +01:00
ae045e4445 indented note block in fix_num_diff.rst 2020-03-04 19:48:12 -07:00
02bdccbae1 added yyy to false positives 2020-03-04 19:45:13 -07:00
be138d368e Merge branch 'master' into fix_numerical_differentiation 2020-03-04 19:11:39 -07:00
968f44601c Updated doc page with delta info and simplified example 2020-03-04 19:08:57 -07:00
6786efa224 Merge commit 'refs/pull/1916/head' of github.com:lammps/lammps into collected-small-fixes 2020-03-04 17:04:45 -05:00
14d17b3513 clean the superfluous newline
I believe this newline in the document is superfluous.
2020-03-04 16:41:27 -05:00
ec87a51a61 put C++11 compliance check into CMake 2020-03-04 14:52:38 -05:00
7bbf070757 document new C++ and CMake requirements in manual 2020-03-04 14:37:51 -05:00
ab51ae854e require C++11 to compile LAMMPS 2020-03-04 14:28:47 -05:00
a972850b39 require CMake version 3.10. remove tests for older versions. 2020-03-04 14:28:33 -05:00
e9544218e6 some corrections to the building the manual documentation 2020-03-04 14:14:12 -05:00
3ca93f10b3 don't run atof() on a NULL pointer in case a potential file has an empty line 2020-03-04 14:00:52 -05:00
b55a6b0fd1 memory correction 2020-03-03 23:28:27 -07:00
cd61cfe8c7 SNAP optimizations, taking advantage of improved data layouts, scratch memory, and hierarchical parallelism. 2020-03-03 13:02:04 -05:00
6354777d09 Merge pull request #1914 from akohlmey/next_lammps_version
Step version string for next patch and stable version
patch_3Mar2020 stable_3Mar2020
2020-03-03 10:27:12 -05:00
3eeb7547b5 step version string for next patch and stable version 2020-03-03 07:25:18 -05:00
c5ee78ca1d Merge pull request #1910 from akohlmey/documentation-fixes
Some more conversions and corrections for the LAMMPS manual
2020-03-03 06:25:44 -05:00
7d598ba8d7 synchronize list of hardware architectures supported by KOKKOS with list in cmake file 2020-03-03 03:33:23 -05:00
7f84de17bd Merge pull request #1912 from migueldiascosta/epyc_kokkos_arch
add EPYC to KOKKOS_ARCH_LIST
2020-03-03 03:32:03 -05:00
a4a5d24a69 add link to github support for subversion clients 2020-03-03 03:19:25 -05:00
0723bf3db7 setup issues with fix numdiff 2020-03-02 13:32:05 -07:00
9339bb085f Update molecule.rst 2020-03-02 01:06:42 -07:00
90bfa6b783 add molecule IDs to molecule templates
for when more than one molecule per file
2020-03-02 00:53:19 -07:00
8636e86f38 Merge pull request #70 from lammps/master
rebase
2020-03-01 22:39:08 -07:00
8f608f6a35 lo-level -> low-level 2020-03-01 10:30:06 -05:00
ff614957c6 encode some more mathematical expressions and symbols 2020-03-01 09:25:20 -05:00
2455e35fd8 typeset mixing rules with embedded math 2020-03-01 08:51:29 -05:00
8765b14377 add EPYC to KOKKOS_ARCH_LIST 2020-03-01 13:45:06 +08:00
8662733dcd convert the remainder of raw html typesetting in pair style smtbq 2020-02-29 14:45:39 -05:00
228a0bfa2e replace hi- with high- 2020-02-29 11:37:47 -05:00
6f47f110f1 use k_B consistently, fix some more math. convert some transcriptions to math 2020-02-29 11:37:31 -05:00
07fc624509 typeset reduced units 2020-02-29 06:41:28 -05:00
66a0e27edf some more cases where we can use embedded math 2020-02-29 04:57:44 -05:00
0e58c1b299 fix issues with restoring box-shifted coords 2020-02-28 12:55:27 -07:00
aaed572b01 Merge branch 'fix_numerical_differentiation' of github.com:charlessievers/lammps into charlie 2020-02-28 12:53:28 -07:00