Commit Graph

23688 Commits

Author SHA1 Message Date
9c84fe8830 Add missing lammps_extract_compute.argtypes 2020-08-27 17:47:49 -04:00
d7e2be1c81 Start Python interface tests for numpy extensions 2020-08-27 17:47:49 -04:00
0b8136a38b Add extract_compute, extract_fix, and extract_variable to lammps.numpy 2020-08-27 17:47:49 -04:00
a216d3f5f5 Fix typo 2020-08-27 17:47:49 -04:00
26d09ea648 Use datatype constants instead of magic numbers 2020-08-27 17:47:49 -04:00
b1fae04751 use consistent style when referencing packages 2020-08-27 17:44:49 -04:00
7b4891a9a3 document the behavior of the gauss pair style to ignore special bond factors 2020-08-27 17:41:43 -04:00
fa13e23f7a add atomic test for gauss pair style 2020-08-27 17:41:25 -04:00
fdb726629f revert "fix" for pair style beck/gpu and correct beck and beck/omp instead
we should consistently apply factor_lj for both, force and energy, or not
2020-08-27 17:14:05 -04:00
a4f1be8fe3 Merge branch 'master' into gpu-bugfix 2020-08-27 17:05:26 -04:00
a54f99f774 Merge pull request #2315 from lammps/peri-doc-page
fix two typos on pair peri doc page
2020-08-27 17:00:06 -04:00
de4bf77757 two typos on pair peri doc page 2020-08-27 13:32:27 -06:00
32aede7769 minor doc clarification 2020-08-27 14:53:09 -04:00
ab90493e5b bond/react: RMSD, remove debugging statements 2020-08-27 14:45:42 -04:00
0d8baff7a9 Rename LAMMPS_DBLE2D to LAMMPS_DOUBLE2D 2020-08-27 14:03:17 -04:00
2f629db3d4 Refactor Zstd dump styles 2020-08-27 13:43:36 -04:00
5c0edeb679 namespace clarify 2020-08-27 12:43:28 -04:00
977a89e537 add separators 2020-08-27 12:33:03 -04:00
794e74e064 return of the lost enum 2020-08-27 12:22:48 -04:00
91554d6287 move RMSD files to new reaction package 2020-08-27 12:13:07 -04:00
ce2b128cf9 Merge branch 'lammps-master' into bond/react-RMSD_constraint 2020-08-27 12:04:09 -04:00
583a09c808 Merge branch 'master' of https://github.com/lammps/lammps into lammps-master 2020-08-27 12:02:08 -04:00
bc49e854ba bond/react RMSD constraint: manual rebase 2020-08-27 11:53:19 -04:00
e4e15157f8 Fixed bugs in the GPU kernels of pair styles beck/gpu and gauss/gpu involving factor_lj 2020-08-26 23:41:00 -05:00
f314b7e54f update format from enumerate to itemize and start next subsection 2020-08-26 23:05:59 -04:00
6a68743e54 transfer a chunk of text from Developer.tex to the manual. 2020-08-26 22:46:55 -04:00
ced78a72eb Add dump custom/zstd and tests 2020-08-26 19:59:28 -04:00
e9fd8b3ec6 Migrate changes to dump custom/gz and add tests 2020-08-26 19:44:55 -04:00
096cef40a8 remove redundant use of \brief 2020-08-26 19:44:23 -04:00
55829752c9 Merge branch 'master' into library-refactor 2020-08-26 19:08:09 -04:00
2f1086dfe4 Merge branch 'python-refactor' into library-refactor 2020-08-26 19:07:44 -04:00
85764b3774 replace a few more c++-style comments with old-fashion c-style comments 2020-08-26 19:07:29 -04:00
1ad82d7cdb add separator comment lines 2020-08-26 19:07:08 -04:00
dbf51af7d1 Fixes segfault due to uninitialized pointers 2020-08-26 18:41:32 -04:00
78a1b92503 Add dump atom zstd tests 2020-08-26 16:35:35 -04:00
007a43a5b2 Add more atom/gz tests 2020-08-26 16:20:02 -04:00
32aa35009b Start tests for compressed dump styles 2020-08-26 16:04:19 -04:00
046fd3d14b Verify valid compression level ranges 2020-08-26 16:03:18 -04:00
d00807ee9a Merge pull request #2311 from stanmoore1/kk_update_3.2
Update Kokkos library in LAMMPS to v3.2
2020-08-26 15:35:25 -04:00
aeb3e20385 Merge pull request #2307 from Vsevak/zbl_reduce_declaration
Fix NaN in GPU-accelerated Tersoff styles with OpenCL backend
2020-08-26 13:56:49 -04:00
629ead6348 Merge pull request #2309 from lammps/doxygen-integration
Add doxygen and graphviz processing into the documentation build
2020-08-26 13:05:00 -04:00
50b8b1bf60 Fix Kokkos HIP compile error 2020-08-26 11:45:24 -05:00
94db627ba5 fix formatting issue 2020-08-26 12:09:43 -04:00
b4403de026 add false positive 2020-08-26 12:09:35 -04:00
d40b658644 cmake: update kokkos version/checksum 2020-08-26 10:05:14 -06:00
8137ada848 Merge branch 'collected-small-changes' into doxygen-integration 2020-08-26 11:51:45 -04:00
bdc952ac88 Merge branch 'master' into collected-small-changes 2020-08-26 11:51:05 -04:00
f89a0f9fe3 must not try to delete computes if they have not been created and their ids not yet set 2020-08-26 11:50:20 -04:00
c8af729701 Merge branch 'master' into collected-small-changes 2020-08-26 11:49:29 -04:00
4ad68c98a0 Merge pull request #2196 from jibril-b-coulibaly/mindlin_rescale
Implement force history in Mindlin granular pair styles
2020-08-26 11:42:06 -04:00