Commit Graph

26090 Commits

Author SHA1 Message Date
7244ccf8b1 update format 2021-04-03 11:04:02 -04:00
cfc39b5a73 complete porting python neighborlist test to c-library version 2021-04-03 10:44:07 -04:00
6205375c03 allow const char for compute/fix id arguments 2021-04-03 10:26:49 -04:00
1a48667026 add minimal test for neighbor list functions 2021-04-03 10:25:14 -04:00
cea4298946 silence LAMMPS output, if requested 2021-04-03 10:25:03 -04:00
5520d6edd7 confirm that no incompatible neighbor lists are found 2021-04-03 10:24:46 -04:00
432ccffb3e find manybody potentials 2021-04-03 10:23:31 -04:00
46f98ec4dc make compatible with const data pointers as arguments 2021-04-03 10:23:16 -04:00
50b789cc36 Merge branch 'master' into neighlist-interface-updates 2021-04-03 10:18:28 -04:00
b1faf17eeb Updates fix wall/gran to mirror recent updates to pair granular. Also some minor changes related to the limit_damping option 2021-04-03 00:48:00 -06:00
678302bfcb avoid a floating point exception in RanMars::rayleigh() from taking log(0) 2021-04-02 22:08:39 -04:00
d3b2ccf9dd numpy version of neighbor list tests 2021-04-02 21:41:26 -04:00
85a5698c1b add find method to neighbor list wrapper classes 2021-04-02 21:41:08 -04:00
7e70def4cc fix errors/typos in manual 2021-04-02 21:00:42 -04:00
c74bb9b56b add more unit tests for neighbor list access 2021-04-02 21:00:26 -04:00
51212e62d9 correct/update docs and parameter names for finding neighbor lists 2021-04-02 19:55:53 -04:00
9da49d9c6f Merge pull request #2685 from akohlmey/collected-small-changes
Collected small changes and fixes
2021-04-02 19:42:04 -04:00
66e885b6e5 Merge branch 'master' into collected-small-changes
# Conflicts:
#	src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp
#	src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp
2021-04-02 17:57:54 -04:00
b976c2d13c Merge pull request #2679 from akohlmey/more-unittests
Expand unit tests
2021-04-02 17:51:29 -04:00
1c43b4a4c3 Merge branch 'fix_ave_chunk_cdof_bug' into collected-small-changes 2021-04-02 17:50:33 -04:00
90ab63f9ad Merge branch 'master' into collected-small-changes 2021-04-02 17:49:27 -04:00
2c00136f22 used correct suffix when installing plugin binaries for testing 2021-04-02 17:49:15 -04:00
abfe8bab59 fix uninitialized memory access issues. consolidate enumerators. 2021-04-02 17:32:29 -04:00
2a10b5ba69 fix bug causing segfaults 2021-04-02 17:21:34 -04:00
af6452065f correct URL to XTC file format docs on the gromacs homepage 2021-04-02 16:48:13 -04:00
7d85461e97 Prevent compilation from breaking with Python 2 2021-04-02 16:32:25 -04:00
79a413aeea replace calls to sqrt() in constant initializers with precomputed numbers.
this also moves those arrays into a separate file and out of the header
2021-04-02 16:15:28 -04:00
160f2cc630 Update ROCm container definitions 2021-04-02 16:11:23 -04:00
7995fd8923 Merge pull request #2689 from bhanudaysharma/patch-1
Update units.rst (documentation for units commands)
2021-04-02 16:09:56 -04:00
c62b1b1050 Merge remote-tracking branch 'github/master' into collected-small-changes 2021-04-02 16:08:51 -04:00
c4f59764d4 reformat pair_coeff section that got misformatted as string 2021-04-02 15:28:09 -04:00
e613da98d6 Merge pull request #2650 from akohlmey/plugin-loader
New PLUGIN package with a LAMMPS plugin loader command
2021-04-02 15:08:44 -04:00
5583901b2c should not set neighbor list request id to non-zero when just requesting a single neighbor list 2021-04-02 13:51:42 -04:00
43735fd3f5 update neighbor list library interface to use ID field in neighbor list to uniquely identify lists 2021-04-02 13:50:50 -04:00
d24f74b582 add stop on file example to fix halt docs 2021-04-02 12:31:46 -04:00
366b49c581 copy NeighRequest::id to NeighList::id so we can identify them when a style has multiple requests 2021-04-02 12:14:34 -04:00
887eb40ad4 fix crash when requesting verbose output. 2021-04-02 12:07:59 -04:00
2dfafe4adb add is_file() special variable function and unit tests for it 2021-04-02 12:07:43 -04:00
6e97417dbf Merge branch 'gran_attractive' of https://github.com/jtclemm/lammps into gran_attractive 2021-04-01 22:24:04 -06:00
17e6f59463 Merge branch 'spin-kokkos' of github.com:julient31/lammps into spin-kokkos 2021-04-01 11:46:15 -06:00
4975295e0f - adding a force/clear equivalent for spins in verlet/kk
- setting all validation problems for spin/kk
2021-04-01 11:45:16 -06:00
c3eb52f46a add force tests for USER-YAFF pair styles 2021-04-01 12:43:24 -04:00
994ee59fd5 correct single() functions for USER-YAFF pair styles to be consistent with compute() 2021-04-01 12:42:48 -04:00
b5ef98cc22 consolidate the documentation for lj/switch3/coulgauss/long and mm3/switch3/coulgauss/long into a single file 2021-04-01 12:42:07 -04:00
9ac246011e remove flags and setup for multi-cutoff r-RESPA support which is missing 2021-04-01 12:14:40 -04:00
e7422a6bf7 silence compiler warnings 2021-04-01 11:28:18 -04:00
3668ce1374 Merge branch 'master' into more-unittests
# Conflicts:
#	unittest/testing/core.h
2021-04-01 11:11:18 -04:00
4c2fb7a431 Porting to new default platform for AMD/HIP in ROCm 4.1 2021-04-01 09:43:13 -05:00
0b60650c1b Merge branch 'master' into collected-small-changes 2021-04-01 10:11:59 -04:00
21c934d2cd Merge pull request #2682 from rbberger/python_unittests
Python package unit tests
2021-04-01 10:11:26 -04:00