Commit Graph

810 Commits

Author SHA1 Message Date
ecc6269648 add useful comments 2023-03-20 10:52:20 -04:00
9f22974209 Merge branch 'develop' of github.com:agiliopadua/lammps into collected-small-changes 2023-03-20 10:50:05 -04:00
3280d6b786 Fixed bug in fep tools 2023-03-20 14:47:40 +01:00
a320f24247 Fixed bug in fep tools 2023-03-20 14:46:01 +01:00
57e86346a6 fix bug where floating point data was formatted as integer since the second column was assumed to be the type 2023-03-19 18:20:31 -04:00
21293f1c08 update links and hashes for new plumed2 releases 2023-03-13 12:10:41 -04:00
2b6c2e07a4 add -help flag and help message output. step version number. update docs. 2023-03-10 21:26:40 -05:00
80233f353f port UTF-8 to ASCII substitution to msi2lmp and apply to reading .frc files 2023-03-10 20:56:55 -05:00
2dad2586f1 update help message 2023-03-10 20:16:39 -05:00
fc4ca0503e make --rdffile, --units, and --temperature required arguments 2023-03-03 20:51:28 -05:00
c3c6c5f154 python2 compatibility (or rather scipy of python2) and avoid NaNs 2023-03-03 20:50:56 -05:00
e4b1a33ced Corrected error in temperature argument managment, added unit as a
command-line parameter
2023-03-03 15:32:46 +01:00
eb750f0217 Adde temperature for BI as a command-line argument 2023-03-03 15:22:49 +01:00
4612cd94f0 Removed bits of useless force computation. 2023-03-03 15:12:27 +01:00
67d4893f6e Added Warning section to pair_bi_tabulate.py file. 2023-03-03 15:10:36 +01:00
ed11cbd2c7 Updated tools/tabulate/README.md file to include pair_bi_tabulate.py 2023-03-03 15:04:46 +01:00
f23c2494ea Created tool file tools/tabulate/pair_bi_tabulate.py 2023-03-03 14:49:38 +01:00
d44ba14030 Merge pull request #3657 from akohlmey/custom-wall-fixes
Add fix wall/table and fix wall/lepton for customizable wall fixes
2023-03-01 20:16:56 -05:00
2e5bc2f6b7 add test example for validating custom potentials 2023-02-23 01:09:44 -05:00
ec87c71064 add documentation for fix wall/lepton, fix wall/table and WallTabulate() 2023-02-23 00:35:25 -05:00
0dcb591ee8 add support to create tables for fix wall/table 2023-02-22 23:31:04 -05:00
6c5c93438c update for ROCm 5.4.3 and CUDA 12.0 2023-02-21 15:00:48 -05:00
2620726c96 Update lammps.i 2023-01-26 09:27:13 +02:00
27da716852 getting out of the insurance business :-) 2023-01-23 16:45:41 -05:00
694b1b5748 remove Fortran library based MESONT styles and the library itself 2023-01-20 19:12:42 -05:00
882f155d94 whitespace 2023-01-13 14:51:40 -05:00
32347792ad follow the usual convention and call dihedral angle phi 2023-01-05 23:00:33 -05:00
6ccdc8df4f include force function in angle table example to show the need for correct unit conversion (force is energy per radian squared) 2023-01-05 23:00:27 -05:00
18d07883c3 python 2 compatibility 2022-12-19 12:13:40 -05:00
bc8812c391 add one more tabulation example showing how to smoothly replace part of a function in a different potential 2022-12-19 12:13:25 -05:00
111faa758d Merge branch 'develop' into collected-small-changes 2022-12-16 18:25:12 -05:00
8998ef23de update docs for tools/tabulate scripts 2022-12-16 02:49:39 -05:00
2de997b52d import tabulate scripts for table files 2022-12-16 01:11:52 -05:00
bded6b7fd0 update OpenMP suppressions for clang 15.0 2022-12-15 16:27:00 -05:00
e9ec915e45 document removal of "box" command. 2022-11-21 17:59:29 -05:00
401b5cee6d add -y flag to add-repository commands to avoid issues with GPG support changes 2022-11-07 07:32:08 -05:00
f9a004c752 synchronize comments and update formatting 2022-11-01 06:29:58 -04:00
248b7383c7 Merge remote-tracking branch 'github/develop' into collected-small-changes
# Conflicts:
#	src/DIPOLE/pair_lj_cut_dipole_long.h
#	src/OPENMP/fix_nvt_sllod_omp.h
#	src/PHONON/fix_phonon.h
#	src/SPIN/pair_spin_dipole_cut.h
#	src/SPIN/pair_spin_dipole_long.h
#	src/STUBS/mpi.h
#	src/UEF/fix_nh_uef.h
#	src/fix_nvt_sllod.h
#	tools/coding_standard/homepage.py
2022-10-24 15:50:50 -04:00
3c4b0a0c04 expand homepage checker tool to check a few more folders and apply updates 2022-10-24 10:58:39 -04:00
1e2ffe6cb7 must bootstrap centos 7 from dockerhub now 2022-10-22 22:58:16 -04:00
7aea2b8840 update Plumed download to version 2.8.1 2022-10-22 22:57:53 -04:00
b26716c44c a few more updates 2022-10-20 23:11:45 -04:00
df92e5f228 add one more folder to check 2022-10-20 23:11:18 -04:00
92f5c5efa1 check and convert a few more folders and files 2022-10-20 21:04:07 -04:00
cccf3f6f78 change email for contacting LAMMPS developers, add to homepage checker 2022-10-20 20:36:03 -04:00
0af2f153de check for and replace *really* old LAMMPS home page URL. apply fixes. 2022-10-20 20:07:12 -04:00
9685689ca6 check for and replace *really* old LAMMPS home page URL. apply fixes. 2022-10-20 18:05:55 -04:00
05cf15b766 include clang-format 2022-10-12 12:31:43 -04:00
bc6e42a610 add more extensive whitespace checking for fortran and unittests 2022-10-04 04:11:39 -04:00
f474b67c7c update swig interface file for recent changes to the library interface 2022-10-03 09:22:02 -04:00