Commit Graph

11286 Commits

Author SHA1 Message Date
1192845ad5 avoid segmentation faults in universe/uloop variable increment 2020-03-25 08:19:24 -04:00
398c030925 whitespace cleanup 2020-03-25 06:52:37 -04:00
3704d90efb Merge branch 'master' into collected-small-fixes 2020-03-25 06:50:11 -04:00
91c1ae8077 Merge pull request #1962 from rbberger/small_fixes
Small fixes
2020-03-25 06:47:28 -04:00
5fa99cb072 Comment cleanup 2020-03-23 21:33:11 -06:00
387c2d0507 Cleaned up comment. 2020-03-23 23:31:12 -04:00
36095bbfdf Tweak comment 2020-03-23 21:15:00 -06:00
bcfc606efb SNAP optimizations, kernel fusion, large reduction of memory usage on the GPU, misc. performance optimizations. 2020-03-23 13:20:56 -07:00
6e1f18961c Convert characters to UTF-8 2020-03-23 09:42:46 -04:00
e1f01d3e65 use consistent naming for c++11 style kspace thread 2020-03-22 21:14:26 -04:00
f560cd6dd5 make certain, the molecular flag is always initialized 2020-03-21 01:08:09 -04:00
54c2381632 Merge pull request #1947 from akohlmey/next_lammps_version
Step version string for next patch release
2020-03-19 18:57:27 -04:00
42cff9270c Merge branch 'master' into restart-consistency 2020-03-19 05:32:45 -04:00
b40bc3993d Merge branch 'master' into restart-consistency 2020-03-19 00:54:04 -04:00
1fd956a696 fix bug when allocating and freeing newly added data structures 2020-03-19 00:51:14 -04:00
9825cd2569 silence compiler warnings 2020-03-19 00:50:30 -04:00
f589cdb8c6 Merge branch 'master' into collected-small-changes 2020-03-19 00:29:08 -04:00
17dd794514 Merge pull request #1891 from charlessievers/fix_numerical_differentiation
New fix to compute properties by numerical differences
2020-03-18 23:31:18 -04:00
78a2f86235 whitespace fixes 2020-03-18 23:13:19 -04:00
71582c99ca rearrange pointer variables to a more logical location, quell compiler warning and initialize all pointer 2020-03-18 22:51:16 -04:00
2714fad178 Merge branch 'master' into collected-small-changes
# Conflicts:
#	doc/src/Build_development.rst
2020-03-18 20:59:16 -04:00
164bf1b60e Merge pull request #1883 from evoyiatzis/master
Coulomb pair style with smeared out charges (coul/slater)
2020-03-18 20:52:47 -04:00
2b39c9968f Merge pull request #1913 from jrgissing/molecule_template_moleculeIDs
Molecule template: molecule-IDs and fragments
2020-03-18 20:31:29 -04:00
3e36acc533 Merge branch 'master' into restart-consistency
# Conflicts:
#	doc/src/fix_halt.rst
2020-03-18 20:30:00 -04:00
d1388b4ea8 Merge pull request #1941 from e-kwsm/typo
Fix typos in comments and output.
2020-03-18 20:24:06 -04:00
b6ce32f651 step version string for next patch release 2020-03-18 17:18:46 -04:00
c28b9f100c remove unused and broken function 2020-03-18 15:38:29 -04:00
ca1e1e2dff Convert British spelling to American 2020-03-18 23:09:23 +09:00
d7cade9d46 Merge branch 'master' into molecule_template_moleculeIDs 2020-03-17 23:08:00 -06:00
9ebd1e4572 convert british spelling to american 2020-03-17 20:41:49 -04:00
0e764a3a48 correct spelling correction 2020-03-17 20:37:33 -04:00
c1268bd1ec remove dead code 2020-03-17 18:55:05 -04:00
66f730b895 setting const on return value has no effect 2020-03-17 18:53:10 -04:00
dae2bce6b0 we can use error->all() and also check the coordinate conversion for valid data 2020-03-17 16:53:22 -04:00
a7d2847140 parse image flags only for valid numbers and requize imz == 0 for 2d-systems 2020-03-17 16:43:34 -04:00
2c282b693e flag two more subroutines can trigger the variable tracking message and slow down compilation 2020-03-17 12:33:23 -04:00
649a8cc01a Fix typo 2020-03-14 13:57:48 +09:00
f1cc6c6e57 Merge pull request #1928 from akohlmey/collected-small-fixes
Collected small fixes and updates for the next patch release
2020-03-13 19:44:04 -04:00
6d9064f98f Revert "fix bug in pair styles lubricate and lubricate/poly"
This reverts commit e368ae9f22.
As it contradicts the comments in the code above the segment.
2020-03-13 18:41:37 -04:00
924629538f restore support for triclinic cells with pppm/intel by calling the corresponding functions in PPPM in that case 2020-03-13 16:01:00 -04:00
4e525f1d56 PPPM in USER-INTEL does not support triclinic cells 2020-03-13 15:30:52 -04:00
e368ae9f22 fix bug in pair styles lubricate and lubricate/poly
Closes #1933
2020-03-13 11:11:27 -04:00
e2b7054f74 include required header 2020-03-12 06:59:04 -04:00
4f0e9e2d26 some cleanup and consistency improvements in MESSAGE package code and docs 2020-03-12 06:51:06 -04:00
8af9d40392 Update DOI resolver
https://www.doi.org/doi_handbook/2_Numbering.html#htmlencoding
2020-03-12 16:53:24 +09:00
ddf14763f7 port diskfree detection in fix halt for MacOSX 2020-03-11 19:28:58 -04:00
e4489f58ca make forward declaration consistent with KIM-API code 2020-03-11 19:05:04 -04:00
e24feab5aa whitespace fix 2020-03-11 09:08:40 -04:00
68e5a18070 must try suffixes when recreating pair hybrid substyles from a restart 2020-03-11 08:45:35 -04:00
43a6c13f01 change 'groups' to 'fragments' 2020-03-10 21:11:34 -06:00