Commit Graph

16315 Commits

Author SHA1 Message Date
adebe90315 Optimized Dynamical Matrix 2019-02-01 21:55:29 -08:00
682b456aae Optimized (but not working) Dynamical Matrix command) 2019-02-01 16:18:17 -08:00
fb30d2d078 Merge pull request #1303 from pastewka/19_dump_nc1
ENH: Output computes/fixes of with arbitrary number of columns to NetCDF
2019-01-25 10:42:46 +01:00
57b804eecf Merge pull request #1301 from stevenvdb/add-user-yaff
Fix mistake in mixing rules for mm3/switch3
2019-01-24 14:16:36 +01:00
a432b668f6 Fix mistake in mixing rules for mm3/switch3 2019-01-24 13:52:46 +01:00
985913bce2 Merge pull request #1297 from stevenvdb/add-user-yaff
Add USER-YAFF package for MOF simulations with QuickFF
2019-01-24 11:05:55 +01:00
f88c5e147a Merge pull request #1298 from jrgissing/bond/react-distance_constraints
Bond/react: add reaction constraints support
2019-01-24 10:55:22 +01:00
098f2906e0 Merge pull request #1299 from ohenrich/user-cgdna
USER-CGDNA PDF docs update
2019-01-24 10:50:44 +01:00
f2544fa738 remove (evil) tabs 2019-01-24 04:44:54 -05:00
5f3a7cbc33 MAINT: Replaced special character with a space. 2019-01-23 11:29:49 +01:00
fbee21f495 distance constraint: clarify use case in docs 2019-01-22 23:22:51 -07:00
7a10ac2019 bond/react:reaction_constraints
introduce a distance constraint between any two reaction-site atoms, in order for reaction to occur
2019-01-22 23:14:58 -07:00
54a481ef1f use correct pair style name in comment about error messages 2019-01-22 12:33:17 -05:00
dd3dbfaee2 restore aphabetical order of improper styles 2019-01-22 12:26:51 -05:00
9caf0ce3e1 add USER-YAFF package to build system 2019-01-22 12:17:04 -05:00
ca31147d00 Fix USER-YAFF documentation issues 2019-01-22 14:58:38 +01:00
7ec6e4b262 Merge branch 'master' into user-cgdna 2019-01-22 13:06:42 +00:00
874e4fdafc Corrected required input angular velocity -> momentum 2019-01-22 13:05:15 +00:00
60b137f241 Add examples for the USER-YAFF package 2019-01-22 10:09:10 +01:00
794bf5084c Implementation and documentation for USER-YAFF package 2019-01-22 10:09:10 +01:00
fb6942a325 Merge pull request #41 from lammps/master
rebase
2019-01-21 20:22:23 -07:00
0fde0f99bc ENH: Support for outputting computes and fixes with arbitrary number of columns. 2019-01-21 23:04:22 +01:00
bd3b712902 Merge pull request #1263 from stanmoore1/kk_snap
Optimize Kokkos SNAP energy calculation
2019-01-18 21:12:56 +01:00
e5b86910e9 Merge branch 'master' of https://github.com/lammps/lammps into kk_snap 2019-01-18 12:03:09 -07:00
b3747ce99b Fix some issues in new version of pair_snap_kokkos_impl.h 2019-01-18 11:58:10 -07:00
037cdfe046 Merge pull request #1291 from stevenvdb/bugfix_improper_virial
Fix bug in virial calculation for impropers fourier and umbrella
2019-01-18 13:51:04 +01:00
3609a33eb8 Merge pull request #1292 from jrgissing/bond/react-limit-total-number-of-reactions
bond/react: strict reaction limit and serial compilation bugfix
2019-01-18 13:16:56 +01:00
94dc5e1133 bond/react: strict reaction limit
also, fixes a bug in the 'serial' build introduced in #1099, wherein no reactions could occur in some cases
2019-01-17 23:13:21 -07:00
6702f65fbb Fix mistake in virial calculation for improper_fourier and improper_umbrella 2019-01-15 10:06:42 +01:00
a5ce656c32 Merge pull request #1288 from jrgissing/bond/react-limit-total-number-of-reactions
Bond/react: limit number of reactions, bugfixes
2019-01-13 10:26:06 -05:00
b0af54ac37 bond/react:limit reaction occurrences 2019-01-13 00:07:03 -07:00
4ec21e1b31 Merge pull request #40 from lammps/master
rebase
2019-01-12 23:28:09 -07:00
3cbf009ce6 Merge pull request #1286 from jrgissing/bond_react-memory_correction
Bond/react: memory correction
2019-01-10 07:09:45 -05:00
8387b2953b bond_react:correctly delete internally-created fixes 2019-01-09 23:14:24 -07:00
e82999ecb4 Merge pull request #39 from lammps/master
rebase
2019-01-09 22:17:33 -07:00
60693a5f8a Change Kokkos SNAP energy shared arrays from thread to team 2019-01-07 16:26:16 -07:00
61c36dd768 Merge pull request #1277 from stanmoore1/kk_reax_bugfix
Fix memory issue in Kokkos Reax
2019-01-07 14:36:22 -05:00
7fe7dd95d0 Fix memory issue in pair_reaxc_kokkos 2019-01-07 12:09:36 -07:00
06f9933c55 Merge pull request #1276 from akohlmey/rename-lebedva-sources
Rename pair style lebedeva/z sources
2019-01-07 11:32:54 -05:00
3d374aa8b3 Merge branch 'master' into kk_snap 2019-01-07 08:44:36 -07:00
98e0d6eab2 rename sources for pair style lebedeva to be consistent with style name 2019-01-06 21:42:08 -05:00
5ec9623294 Merge pull request #1274 from lammps/rerun-doc
add parallel dump file info to rerun doc page
2019-01-06 21:36:56 -05:00
43edcf4c02 Merge pull request #1275 from jrgissing/bond/react-check-template-topology-overflow
Bond/react: check for molecule template topology overflow
2019-01-06 21:36:13 -05:00
9ae84bc367 bond/react: check template for topology overflow 2019-01-06 17:07:35 -07:00
ca6c1c4b41 Merge pull request #38 from lammps/master
rebase
2019-01-06 16:58:33 -07:00
0cc9a445e8 add parallel dump file info to rerun doc page 2019-01-04 17:09:11 -07:00
c26b2078ee Merge pull request #1271 from akohlmey/next-patch-release
Patch release 4 January 2019
patch_4Jan2019
2019-01-03 22:28:55 -05:00
856c325ac4 Merge pull request #1273 from akohlmey/rename-lebedeva
Rename pair style lebedeva to lebedeva/z
2019-01-03 19:43:08 -05:00
7323179de3 rename pair style lebedeva to lebedeva/z to be consistent with kolmolgorov/crespi/z 2019-01-03 17:30:16 -05:00
19e12aada5 Patch release 4 January 2019 2019-01-03 13:44:18 -05:00