Commit Graph

29764 Commits

Author SHA1 Message Date
11d3b13e31 Added a lot of boilerplate for inner data, not working yet 2022-03-10 18:40:59 -07:00
ali
7343f6e5b8 writing column names is optional 2022-03-10 15:23:21 -06:00
079f7559ea Merge branch 'develop' of github.com:fujiisoup/lammps into collected-small-changes 2022-03-10 16:01:02 -05:00
fa9683e6d2 Merge remote-tracking branch 'github/develop' into collected-small-changes 2022-03-10 16:00:55 -05:00
adef6bd10c Added first draft of inner switching functions 2022-03-10 13:58:14 -07:00
0828ae66a0 Fix a typo in the doc 2022-03-11 05:48:34 +09:00
0fcf40c48e use MathConst::MY_PI more consistently and benefit from it being a constexpr 2022-03-10 14:14:32 -05:00
8e85481afa use MathConst::MY_PI instead of inferring it from acos(-1). 2022-03-10 14:00:34 -05:00
12b144fd0e change math const from M_ to MY_ using math_const.h 2022-03-10 12:36:41 -05:00
5bf1ab0e2d try moving _USE_MATH_DEFINES to cpp file from header for windows compilation 2022-03-10 11:15:25 -05:00
1e4a6dcb41 fix missing #endif in lb/fluid header 2022-03-10 10:37:08 -05:00
c6fe7ed4f4 add _USE_MATH_DEFINES for windows compilation 2022-03-10 10:18:50 -05:00
0a1fa5e040 lb/fluid code cleanup for whitespace, unused vars, windows cmath 2022-03-10 09:53:44 -05:00
c9007501a2 remove cerr iostream reference from lb/fluid 2022-03-10 08:43:54 -05:00
43319120d0 fix qeq/dynamic and qeq/fire need half neighbor list not full 2022-03-10 06:30:10 -05:00
1bba1ca2ae fix logic bug 2022-03-10 05:44:31 -05:00
61f5bbd633 update logic to avoid stall with neighbor list statistic during final summary 2022-03-10 05:21:53 -05:00
06e7bd8144 follow KOKKOS' advice about CPU binding of threads 2022-03-10 01:18:15 -05:00
abd8a6ee15 remove incorrect comment 2022-03-10 01:17:44 -05:00
10f8a597c7 use proper header for access to Kokkos class. 2022-03-10 01:11:33 -05:00
837b8fb753 bugfix 2022-03-10 01:00:34 -05:00
86b686f159 correct handling of neighflag member variable in KOKKOS styles 2022-03-10 00:52:16 -05:00
799ab965d9 make neighbor list request flags protected and add selected friends 2022-03-09 23:25:26 -05:00
26c0b9cf87 move calculation of number of neighbors to Neighbor class
this allows reusing the code in the ImbalanceNeigh class
2022-03-09 23:18:28 -05:00
3ef02edb48 adapt KOKKOS package styles to use new neighbor list request API 2022-03-09 22:43:38 -05:00
9f44221ee3 update neighborlist requests for new API in KSPACE package 2022-03-09 21:20:18 -05:00
2e2bd37883 automatically enable intel neighbor list request property for intel pair styles 2022-03-09 21:19:19 -05:00
9b26726f51 change to clang-format for LATBOLTZ routines 2022-03-09 20:41:28 -05:00
9bbd1df57b another chunk of neighbor list request updates 2022-03-09 19:49:08 -05:00
c4b23bd7e5 programming style updates use newer/simpler APIs 2022-03-09 19:21:03 -05:00
888db4b0ef update examples to standard lammps conventions 2022-03-09 18:13:45 -05:00
e8547af049 update neighbor list requests and compute style lookups in machine learning packages 2022-03-09 06:49:07 -05:00
3bb7a247ac convert some more files to use the new neighbor list request API 2022-03-08 21:29:33 -05:00
cef5076c9a no need to have a multi-threaded neighbor list in fix peri/neigh
I builds just a single neighbor list during setup.
2022-03-08 18:23:46 -05:00
1db981c784 convert a few more styles to the new neighbor request API 2022-03-08 18:20:28 -05:00
3c3912aff2 add deprecated lb/fluid integrator fixes to fix_deprecated 2022-03-08 17:10:22 -05:00
16449c3d11 fix merge conflicts for new version of lb/fluid and minor updates from develop branch on virtual functions and removed fix styles 2022-03-08 16:38:32 -05:00
55f8bf9c51 adapt some more styles to use the new neighbor list request API 2022-03-08 15:27:37 -05:00
fd73d1376a Merge branch 'develop' into neigh-request-refactor 2022-03-08 13:04:32 -05:00
dfbeedfded convert more neighbor list requests to the new API 2022-03-08 12:39:05 -05:00
deb694745b update neighbor list requests with default settings 2022-03-08 06:34:27 -05:00
028c8b5d27 add default arguments for requests with default flags 2022-03-08 06:33:27 -05:00
1296d6d938 update neighbor list request developer notes 2022-03-08 06:32:48 -05:00
3b0a6ac840 add support for requesting SSA neighbor lists and update a few more styles 2022-03-08 06:17:13 -05:00
decdcd0b55 Revert "programming style updates"
This reverts commit 5242409ebd.
2022-03-08 06:15:11 -05:00
5242409ebd programming style updates 2022-03-08 05:17:18 -05:00
795f24c3ff honor NEWTON_ON/OFF request flags 2022-03-08 05:17:18 -05:00
369b8365bf update QEQ, ASPHERE, and KIM packages to use new neighbor list request API 2022-03-08 05:16:55 -05:00
1aa8b64283 convert GPU package styles to use new neighbor list request API 2022-03-08 04:37:46 -05:00
374917fb6f tweak platform tests for CPU time to avoid bogus failures on windows 2022-03-07 21:42:02 -05:00