Commit Graph

16425 Commits

Author SHA1 Message Date
ae85ca18fc provide multiple and more specific pull request templates 2019-02-07 15:53:46 +01:00
4d192e541e update github contribution guidelines text 2019-02-07 14:58:52 +01:00
f80c577b3c Merge pull request #1316 from akohlmey/python-portable-header
Rename python.h to lmppython.h
2019-02-07 14:05:49 +01:00
510641c065 Merge pull request #1319 from lammps/akohlmey-new-issue-templates
Update issue templates to have a different template for bug reports and feature requests.
2019-02-07 14:02:10 +01:00
ebcbc5bdbd fix some formatting and spelling/grammar errors in bug report template 2019-02-06 17:32:44 -05:00
c9a7513dc6 remove outdated generic issue template 2019-02-06 17:26:59 -05:00
17cd92a3f2 Update issue templates
Take advantage of the fact, that GitHub now allows to have separate issue templates for bug reports and feature requests
2019-02-06 17:15:52 -05:00
7e1f760b72 rename python.h to lmppython.h and correspondingly python.cpp to lmppython.cpp 2019-02-04 14:24:53 -05:00
d6eaf73db1 Merge pull request #1307 from akohlmey/next-patch-release
Patch release 1 February 2019
patch_1Feb2019
2019-02-01 20:22:18 +01:00
2b5073fb90 Merge pull request #1311 from akohlmey/correct-delete-callback
Correct calls to atom->delete_callback()
2019-02-01 17:25:25 +01:00
f2a977884c Merge pull request #1290 from akohlmey/python-script-portability
Use argparse module in for Install.py scripts in lib and further portability and consistency enhancements. Some lint removal as well.
2019-02-01 01:18:40 +01:00
bc2eeaf22a remove extraneous atom->delete_callback() 2019-01-31 19:10:14 -05:00
5c927d484e add missing atom->delete_callback() 2019-01-31 19:09:59 -05:00
8ee1fefe19 add pointer to README and Manual to help. 2019-01-31 18:46:43 -05:00
763dda64af update lib/gpu/README to current state 2019-01-31 18:45:17 -05:00
a9f8b17cbd Merge pull request #1282 from akohlmey/collected-small-changes
Collected small changes and bugfixes for the next patch release
2019-02-01 00:24:15 +01:00
f28ab59695 output bounding box info for regions, if present 2019-01-31 18:12:56 -05:00
2e60e461a0 must convert regions bounding box to lattice coordinates before checking to reduce lattice creation range 2019-01-31 18:12:37 -05:00
d6a918f4fd Merge pull request #1270 from akohlmey/get-moltemplate-from-web
Replace bundled moltemplate distribution with installation instructions only
2019-01-31 22:58:31 +01:00
7606529f03 Merge pull request #1302 from akohlmey/combined-user-fep-soft-updates
Combined USER-FEP related updates
2019-01-31 22:57:51 +01:00
cdb07f9f06 Merge pull request #1310 from akohlmey/reaxc-with-qeq-shielded
Support using fix qeq/shielded with pair style reax/c
2019-01-31 22:57:31 +01:00
0cce3387bb Merge pull request #1285 from Adrian-Diaz/4D-grow-memory
Added 4D memory grow routine
2019-01-31 17:32:45 +01:00
a93d8dda3c add example input and logfiles for using fix qeq/shielded with pair style reax/c 2019-01-31 14:14:29 +01:00
327ca344ff make fix qeq/shielded fully compatible with pair style reax/c as a replacement for fix qeq/reax 2019-01-31 13:49:05 +01:00
c5256624e8 document coul/streitz and reax/c keywords to extract qeq parameters from pair styles 2019-01-31 13:48:06 +01:00
ae6fb92478 whitespace cleanup 2019-01-31 12:02:43 +01:00
14ab0ec459 remove references to pre-installed packages as this was changed with the 22 August 2018 version 2019-01-31 12:02:22 +01:00
8338969af5 bugfix for create_atoms region optimization 2019-01-31 11:46:03 +01:00
ef5c327f74 Merge branch 'master' into collected-small-changes 2019-01-31 11:45:15 +01:00
06d5c1d62f Merge pull request #1279 from akohlmey/create-atoms-bounding-box
Optimize performance of create_atoms for large boxes and small regions
2019-01-31 09:39:55 +01:00
0e1c6082b0 Merge pull request #1309 from PabloPiaggi/pair_entropy
compute entropy/atom - enhancement/optimization
2019-01-31 09:36:44 +01:00
a59a385d6e fix storage size for internal compute ids in fix plumed 2019-01-31 02:55:37 -05:00
d2846404bd update development workflow description to state of latest discussions 2019-01-31 02:55:11 -05:00
ee5f39d895 Patch release 1 February 2019 2019-01-30 16:16:32 -05:00
1d6bf1ea7d add overlooked entry to Purge.list 2019-01-30 18:05:10 +01:00
ccdfde4978 Update example log file 2019-01-30 15:16:35 +01:00
136e247cd8 compute entropy/atom - Use NL with ghost atoms only with avg yes 2019-01-30 14:59:23 +01:00
8cc593fe6b Merge pull request #1308 from agiliopadua/master
Fix in extract() method of pair_thole
2019-01-30 08:12:30 +01:00
f7bb48102f Fix in extract() method of pair_thole 2019-01-29 18:03:12 +01:00
bad6c8aa35 Patch release 30 January 2019 2019-01-29 13:37:50 +01:00
1465352454 some cleanups and small bugfixes to conform better with python conventions 2019-01-28 17:37:05 -05:00
0cae619320 increase portability by using python modules instead of subprocesses 2019-01-28 15:54:19 -05:00
b7ab017a76 improve portability by using shutil.copyfile, os.path.join, and make -C 2019-01-28 17:44:46 +01:00
4fcfa4987a fix typo 2019-01-28 14:56:47 +01:00
53f600ea35 use enable all available plumed modules when using download/compile mode 2019-01-26 09:55:48 -05:00
8c323a7056 fix issue in USER-PLUMED due to incorrectly copying strings 2019-01-26 05:58:41 -05:00
21dac57c7c fix typo 2019-01-26 05:16:38 -05:00
6c72d15c31 Merge branch 'core_soft' of https://github.com/agiliopadua/lammps into combined-user-fep-soft-updates
Resolved Conflicts:
	doc/src/Commands_pair.txt
	doc/src/pair_fep_soft.txt
	doc/src/pair_style.txt
	doc/src/pairs.txt
2019-01-25 16:25:19 +01:00
f2aab01e96 Approximation in tail correction better explained 2019-01-25 15:04:52 +01:00
fb30d2d078 Merge pull request #1303 from pastewka/19_dump_nc1
ENH: Output computes/fixes of with arbitrary number of columns to NetCDF
2019-01-25 10:42:46 +01:00